Wall clock time and date at job start Mon Mar 30 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48500 * 109.46836 * 239.99542 * 3 2 1 5 5 H 1.48501 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46945 * 119.99954 * 3 2 1 7 7 C 1.39917 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00148 * 163.71701 * 7 2 1 9 9 C 1.41309 * 119.99606 * 343.71427 * 7 2 1 10 10 C 1.40779 * 120.22177 * 334.01986 * 9 7 2 11 11 C 1.36551 * 119.77800 * 180.23026 * 10 9 7 12 12 C 1.38963 * 120.21870 * 359.49809 * 11 10 9 13 13 F 1.35103 * 119.77698 * 180.25265 * 12 11 10 14 14 C 1.38918 * 120.43772 * 0.51076 * 12 11 10 15 15 C 1.36584 * 120.22386 * 359.74140 * 14 12 11 16 16 C 1.50700 * 120.11542 * 180.02562 * 15 14 12 17 17 H 1.08996 * 112.74547 * 229.64808 * 16 15 14 18 18 C 1.53505 * 113.47523 * 98.87790 * 16 15 14 19 19 C 1.53635 * 83.53771 * 219.23208 * 18 16 15 20 20 N 1.47482 * 87.95204 * 25.97505 * 19 18 16 21 21 H 0.96994 * 119.99653 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.10981 * 359.96146 * 10 9 7 23 23 H 1.08004 * 119.88827 * 179.75199 * 11 10 9 24 24 H 1.08003 * 119.88671 * 179.72885 * 14 12 11 25 25 H 1.09006 * 114.17053 * 332.85637 * 18 16 15 26 26 H 1.09001 * 114.17625 * 105.56410 * 18 16 15 27 27 H 1.08998 * 113.41763 * 271.21258 * 19 18 16 28 28 H 1.08994 * 113.57302 * 140.76879 * 19 18 16 29 29 H 1.00899 * 111.00429 * 221.35489 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6964 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6965 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0557 -1.2305 -0.2617 9 6 1.3442 -2.4107 0.3443 10 6 0.2126 -2.3792 1.1812 11 6 -0.4193 -3.5438 1.5113 12 6 0.0448 -4.7563 1.0158 13 9 -0.5903 -5.9026 1.3441 14 6 1.1607 -4.7979 0.1894 15 6 1.8096 -3.6444 -0.1483 16 6 3.0195 -3.6924 -1.0454 17 1 3.8644 -3.1331 -0.6437 18 6 2.7075 -3.3600 -2.5112 19 6 3.7144 -4.4840 -2.7993 20 7 3.3724 -5.0557 -1.4836 21 1 -0.4849 0.8400 -0.0004 22 1 -0.1519 -1.4376 1.5643 23 1 -1.2852 -3.5221 2.1565 24 1 1.5164 -5.7456 -0.1872 25 1 1.6852 -3.5885 -2.8128 26 1 3.0402 -2.3706 -2.8252 27 1 4.7450 -4.1356 -2.8666 28 1 3.4292 -5.1206 -3.6368 29 1 4.1981 -5.3863 -1.0071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238556607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:56 Heat of formation + Delta-G solvation = -0.494538 kcal Electronic energy + Delta-G solvation = -14727.583114 eV Core-core repulsion = 12144.466593 eV Total energy + Delta-G solvation = -2583.116521 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.37138 -39.31363 -36.92950 -33.60952 -30.29064 -29.36807 -27.03062 -25.52949 -24.34418 -21.21331 -20.51329 -18.78145 -17.34874 -16.54156 -16.07754 -15.32109 -14.59159 -14.13490 -14.10840 -13.82394 -13.00081 -12.65922 -12.23316 -11.98510 -11.75173 -11.37719 -11.18112 -11.13036 -10.88728 -10.60018 -10.52154 -10.13446 -9.92132 -9.32601 -9.16347 -8.46362 -7.54076 -7.26351 -6.84346 -4.41507 2.63513 2.89204 3.01262 3.02515 3.11993 3.85050 4.50638 4.70995 5.18290 5.34951 5.53570 5.80678 5.90240 5.95133 6.15068 6.17665 6.28444 6.49354 6.54520 6.64219 6.80760 6.96149 7.15917 7.19642 7.49254 7.65495 7.80889 7.86131 8.00749 8.20453 8.49268 8.77522 8.85125 10.09739 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.021734 B = 0.012388 C = 0.008311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.002481 B = 2259.736674 C = 3368.164271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.079 0.921 9 C 0.113 3.887 10 C -0.146 4.146 11 C -0.128 4.128 12 C -0.055 4.055 13 F -0.176 7.176 14 C -0.091 4.091 15 C -0.166 4.166 16 C 0.107 3.893 17 H 0.070 0.930 18 C -0.125 4.125 19 C -0.005 4.005 20 N -0.627 5.627 21 H 0.282 0.718 22 H 0.125 0.875 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -0.906 -2.333 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.097 0.903 9 C 0.110 3.890 10 C -0.165 4.165 11 C -0.147 4.147 12 C -0.074 4.074 13 F -0.155 7.155 14 C -0.110 4.110 15 C -0.169 4.169 16 C -0.003 4.003 17 H 0.088 0.912 18 C -0.163 4.163 19 C -0.135 4.135 20 N -0.251 5.251 21 H 0.093 0.907 22 H 0.143 0.857 23 H 0.116 0.884 24 H 0.131 0.869 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.047 -1.257 -2.424 4.882 hybrid contribution 1.026 1.140 0.171 1.543 sum 5.073 -0.117 -2.253 5.552 Atomic orbital electron populations 1.69811 1.07547 1.29495 1.34699 1.25907 0.94739 1.01276 0.92304 0.86383 0.80177 0.80323 0.79992 1.18976 1.20284 1.18809 1.19460 0.97394 0.90817 1.40525 0.90326 1.17433 0.91360 0.91570 0.88680 1.20909 0.98811 0.96330 1.00481 1.20487 1.00333 0.92202 1.01660 1.17406 0.99109 0.81001 1.09924 1.91270 1.82229 1.49536 1.92514 1.20159 0.94475 0.98682 0.97703 1.18928 1.00280 0.93051 1.04594 1.21537 0.96201 0.88118 0.94489 0.91221 1.23092 0.99656 0.97458 0.96106 1.23517 0.98063 0.97219 0.94729 1.67288 1.32704 1.21380 1.03709 0.90651 0.85697 0.88434 0.86874 0.89319 0.91056 0.92590 0.90626 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.49 10.96 55.55 0.61 -18.88 15 2 C 0.08 1.80 5.16 -17.34 -0.09 1.71 15 3 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 15 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 5 H -0.28 -5.34 7.11 56.52 0.40 -4.93 15 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 7 C -0.45 -11.08 8.47 -37.79 -0.32 -11.40 15 8 H 0.08 1.83 6.78 -52.49 -0.36 1.47 15 9 C 0.11 2.84 5.56 -106.82 -0.59 2.25 15 10 C -0.15 -3.71 8.64 -39.23 -0.34 -4.05 15 11 C -0.13 -3.11 9.96 -39.92 -0.40 -3.50 15 12 C -0.05 -1.34 7.32 -39.06 -0.29 -1.63 15 13 F -0.18 -4.18 17.26 2.25 0.04 -4.14 15 14 C -0.09 -2.16 9.38 -39.93 -0.37 -2.53 15 15 C -0.17 -3.90 5.38 -104.27 -0.56 -4.46 15 16 C 0.11 2.09 3.32 -72.58 -0.24 1.85 15 17 H 0.07 1.33 7.40 -51.93 -0.38 0.95 15 18 C -0.13 -2.26 8.00 -26.14 -0.21 -2.47 15 19 C 0.00 -0.07 8.62 -7.48 -0.06 -0.14 15 20 N -0.63 -10.81 7.16 -116.51 -0.83 -11.65 15 21 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 22 H 0.13 3.23 6.21 -52.49 -0.33 2.90 15 23 H 0.10 2.16 8.06 -52.48 -0.42 1.74 15 24 H 0.11 2.55 7.10 -52.48 -0.37 2.18 15 25 H 0.09 1.74 8.11 -51.93 -0.42 1.32 15 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 29 H 0.31 4.67 8.91 -39.29 -0.35 4.32 15 LS Contribution 251.39 15.07 3.79 3.79 Total: -1.00 -26.35 251.39 -7.94 -34.28 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -3.04 Total: 8.32 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -3.48 Total: -24.37 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: -0.23 Total: -30.53 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.04 Total: -4.14 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.35 -7.94 -34.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238556607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.790 kcal (2) G-P(sol) polarization free energy of solvation -26.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds