Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47249 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46985 * 119.99880 * 3 2 1 6 6 H 1.48498 * 109.47369 * 239.99891 * 3 2 1 7 7 C 1.39921 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99809 * 206.19353 * 7 2 1 9 9 C 1.41308 * 120.00347 * 26.19474 * 7 2 1 10 10 C 1.40788 * 120.21459 * 25.21745 * 9 7 2 11 11 C 1.36545 * 119.77492 * 180.02562 * 10 9 7 12 12 C 1.38960 * 120.22111 * 0.02562 * 11 10 9 13 13 F 1.35104 * 119.78000 * 179.97438 * 12 11 10 14 14 C 1.38921 * 120.44110 * 359.97438 * 12 11 10 15 15 C 1.36587 * 120.21739 * 359.71866 * 14 12 11 16 16 C 1.50698 * 120.11419 * 180.29636 * 15 14 12 17 17 N 1.46904 * 115.55193 * 92.38209 * 16 15 14 18 18 C 1.53006 * 117.49921 * 306.67882 * 16 15 14 19 19 C 1.53000 * 117.49944 * 238.05511 * 16 15 14 20 20 H 0.96990 * 120.00466 * 185.23841 * 1 2 3 21 21 H 1.08000 * 120.10959 * 359.97438 * 10 9 7 22 22 H 1.08007 * 119.88915 * 180.02562 * 11 10 9 23 23 H 1.08000 * 119.89145 * 180.02562 * 14 12 11 24 24 H 1.00897 * 110.99350 * 325.58699 * 17 16 15 25 25 H 1.00895 * 110.99471 * 89.53608 * 17 16 15 26 26 H 1.09001 * 117.49553 * 359.97438 * 18 16 15 27 27 H 1.08991 * 117.50400 * 145.01911 * 18 16 15 28 28 H 1.09005 * 117.49853 * 214.97239 * 19 16 15 29 29 H 1.08995 * 117.49873 * 359.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0963 1.6963 1.2126 6 1 3.0963 1.6964 -1.2124 7 6 2.0081 -1.2118 -0.0005 8 1 3.0049 -1.2600 0.4123 9 6 1.4104 -2.3725 -0.5412 10 6 0.4046 -2.2612 -1.5201 11 6 -0.1672 -3.3887 -2.0361 12 6 0.2401 -4.6428 -1.5978 13 9 -0.3320 -5.7525 -2.1140 14 6 1.2317 -4.7633 -0.6323 15 6 1.8203 -3.6475 -0.1085 16 6 2.9004 -3.7810 0.9338 17 7 4.2761 -3.8178 0.4197 18 6 2.5863 -4.6217 2.1731 19 6 2.6685 -3.0978 2.2830 20 1 -0.4850 -0.8364 0.0767 21 1 0.0859 -1.2872 -1.8611 22 1 -0.9386 -3.3054 -2.7874 23 1 1.5418 -5.7424 -0.2984 24 1 4.3166 -4.2900 -0.4710 25 1 4.6623 -2.8880 0.3539 26 1 1.5982 -5.0778 2.2345 27 1 3.4003 -5.2023 2.6070 28 1 3.5368 -2.6760 2.7894 29 1 1.7349 -2.5514 2.4166 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238562183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = -18.695455 kcal Electronic energy + Delta-G solvation = -14861.104105 eV Core-core repulsion = 12277.198333 eV Total energy + Delta-G solvation = -2583.905772 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.55643 -38.69919 -36.14608 -33.92626 -30.43632 -29.68064 -29.23915 -25.11691 -22.32370 -21.89766 -20.85838 -19.03687 -18.02611 -16.31299 -15.25878 -14.89792 -14.68782 -14.62505 -14.29570 -14.05128 -13.45114 -12.81009 -12.64341 -12.00573 -11.77926 -11.61472 -11.18893 -10.92274 -10.79987 -10.51929 -10.13642 -9.95519 -9.84896 -9.28383 -9.04994 -8.22593 -7.86462 -7.59269 -7.35166 -4.59456 2.47266 2.54937 3.06126 3.13048 3.25514 3.87850 4.31812 4.50999 4.98689 5.20204 5.44223 5.67783 5.80559 5.93186 6.01021 6.26016 6.27144 6.47387 6.56387 6.71424 6.85478 6.87574 7.14185 7.31464 7.51993 7.56026 7.65249 7.78945 7.94382 7.97777 8.10526 8.53201 8.66111 9.85283 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.012644 C = 0.009085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.940439 B = 2213.984281 C = 3081.384070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.038 3.962 3 Si 1.062 2.938 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.203 4.203 11 C -0.102 4.102 12 C -0.069 4.069 13 F -0.174 7.174 14 C -0.083 4.083 15 C -0.180 4.180 16 C 0.118 3.882 17 N -0.811 5.811 18 C -0.174 4.174 19 C -0.151 4.151 20 H 0.301 0.699 21 H 0.114 0.886 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.340 0.660 25 H 0.339 0.661 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 -1.012 1.218 4.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.185 4.185 3 Si 0.885 3.115 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.524 4.524 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.222 4.222 11 C -0.122 4.122 12 C -0.089 4.089 13 F -0.153 7.153 14 C -0.103 4.103 15 C -0.183 4.183 16 C 0.025 3.975 17 N -0.338 5.338 18 C -0.212 4.212 19 C -0.189 4.189 20 H 0.114 0.886 21 H 0.132 0.868 22 H 0.119 0.881 23 H 0.120 0.880 24 H 0.152 0.848 25 H 0.152 0.848 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.624 0.183 1.825 4.061 hybrid contribution -0.421 -1.379 -0.930 1.716 sum 3.202 -1.197 0.895 3.534 Atomic orbital electron populations 1.70479 1.08295 1.34457 1.27508 1.27077 0.95619 1.04483 0.91364 0.83661 0.75783 0.73850 0.78169 1.19775 1.19902 1.19903 1.20555 1.03551 0.93662 1.34606 0.90077 1.17521 0.90714 0.92073 0.90018 1.20795 1.03439 0.96855 1.01158 1.20407 0.99908 0.91780 1.00061 1.17189 1.04010 0.81754 1.05930 1.91283 1.84773 1.52347 1.86917 1.20147 0.95838 0.98030 0.96235 1.18849 1.03764 0.92530 1.03190 1.19321 0.86847 1.03902 0.87430 1.58830 1.17840 1.23514 1.33652 1.23124 1.01504 0.94251 1.02326 1.22894 1.02770 0.94102 0.99084 0.88565 0.86848 0.88089 0.87996 0.84813 0.84763 0.89667 0.89399 0.89610 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.39 12.33 55.55 0.68 -18.71 15 2 C 0.04 0.88 4.92 -17.34 -0.09 0.80 15 3 Si 1.06 20.01 30.00 -169.99 -5.10 14.91 15 4 H -0.27 -5.20 7.11 56.52 0.40 -4.79 15 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.50 -11.73 7.45 -37.79 -0.28 -12.01 15 8 H 0.08 1.86 6.58 -52.48 -0.35 1.51 15 9 C 0.10 2.42 5.29 -106.82 -0.56 1.85 15 10 C -0.20 -4.91 7.92 -39.23 -0.31 -5.22 15 11 C -0.10 -2.36 9.96 -39.92 -0.40 -2.76 15 12 C -0.07 -1.61 7.32 -39.06 -0.29 -1.89 15 13 F -0.17 -3.93 17.26 2.25 0.04 -3.90 15 14 C -0.08 -1.85 9.42 -39.92 -0.38 -2.23 15 15 C -0.18 -4.04 5.12 -104.27 -0.53 -4.57 15 16 C 0.12 2.32 1.84 -132.75 -0.24 2.07 15 17 N -0.81 -14.33 9.75 -0.19 0.00 -14.33 15 18 C -0.17 -3.14 9.96 -26.73 -0.27 -3.40 15 19 C -0.15 -2.86 8.67 -26.73 -0.23 -3.09 15 20 H 0.30 7.67 6.71 -40.82 -0.27 7.39 15 21 H 0.11 2.80 6.50 -52.49 -0.34 2.46 15 22 H 0.10 2.12 8.06 -52.48 -0.42 1.70 15 23 H 0.10 2.12 8.06 -52.49 -0.42 1.70 15 24 H 0.34 5.85 8.90 -39.29 -0.35 5.50 15 25 H 0.34 5.78 8.79 -39.29 -0.35 5.44 15 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 27 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 15 29 H 0.10 1.99 7.92 -51.93 -0.41 1.58 15 LS Contribution 254.47 15.07 3.83 3.83 Total: -1.00 -24.95 254.47 -7.10 -32.05 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -2.98 Total: 16.60 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -3.58 Total: -30.46 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.68 Total: -33.03 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.10 Total: 14.91 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -24.95 -7.10 -32.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238562183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.351 kcal (2) G-P(sol) polarization free energy of solvation -24.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds