Wall clock time and date at job start Mon Mar 30 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47249 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46985 * 119.99880 * 3 2 1 6 6 H 1.48498 * 109.47369 * 239.99891 * 3 2 1 7 7 C 1.39921 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99809 * 206.19353 * 7 2 1 9 9 C 1.41308 * 120.00347 * 26.19474 * 7 2 1 10 10 C 1.40788 * 120.21459 * 25.21745 * 9 7 2 11 11 C 1.36545 * 119.77492 * 180.02562 * 10 9 7 12 12 C 1.38960 * 120.22111 * 0.02562 * 11 10 9 13 13 F 1.35104 * 119.78000 * 179.97438 * 12 11 10 14 14 C 1.38921 * 120.44110 * 359.97438 * 12 11 10 15 15 C 1.36587 * 120.21739 * 359.71866 * 14 12 11 16 16 C 1.50698 * 120.11419 * 180.29636 * 15 14 12 17 17 N 1.46904 * 115.55193 * 92.38209 * 16 15 14 18 18 C 1.53006 * 117.49921 * 306.67882 * 16 15 14 19 19 C 1.53000 * 117.49944 * 238.05511 * 16 15 14 20 20 H 0.96990 * 120.00466 * 185.23841 * 1 2 3 21 21 H 1.08000 * 120.10959 * 359.97438 * 10 9 7 22 22 H 1.08007 * 119.88915 * 180.02562 * 11 10 9 23 23 H 1.08000 * 119.89145 * 180.02562 * 14 12 11 24 24 H 1.00897 * 110.99350 * 325.58699 * 17 16 15 25 25 H 1.00895 * 110.99471 * 89.53608 * 17 16 15 26 26 H 1.09001 * 117.49553 * 359.97438 * 18 16 15 27 27 H 1.08991 * 117.50400 * 145.01911 * 18 16 15 28 28 H 1.09005 * 117.49853 * 214.97239 * 19 16 15 29 29 H 1.08995 * 117.49873 * 359.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0963 1.6963 1.2126 6 1 3.0963 1.6964 -1.2124 7 6 2.0081 -1.2118 -0.0005 8 1 3.0049 -1.2600 0.4123 9 6 1.4104 -2.3725 -0.5412 10 6 0.4046 -2.2612 -1.5201 11 6 -0.1672 -3.3887 -2.0361 12 6 0.2401 -4.6428 -1.5978 13 9 -0.3320 -5.7525 -2.1140 14 6 1.2317 -4.7633 -0.6323 15 6 1.8203 -3.6475 -0.1085 16 6 2.9004 -3.7810 0.9338 17 7 4.2761 -3.8178 0.4197 18 6 2.5863 -4.6217 2.1731 19 6 2.6685 -3.0978 2.2830 20 1 -0.4850 -0.8364 0.0767 21 1 0.0859 -1.2872 -1.8611 22 1 -0.9386 -3.3054 -2.7874 23 1 1.5418 -5.7424 -0.2984 24 1 4.3166 -4.2900 -0.4710 25 1 4.6623 -2.8880 0.3539 26 1 1.5982 -5.0778 2.2345 27 1 3.4003 -5.2023 2.6070 28 1 3.5368 -2.6760 2.7894 29 1 1.7349 -2.5514 2.4166 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238562183.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:32 Heat of formation + Delta-G solvation = -32.238075 kcal Electronic energy + Delta-G solvation = -14861.691357 eV Core-core repulsion = 12277.198333 eV Total energy + Delta-G solvation = -2584.493024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.37776 -40.39736 -37.77657 -35.72479 -31.90649 -31.42422 -31.05512 -26.93690 -24.03279 -23.51253 -22.56341 -20.68922 -19.79172 -18.01625 -17.02137 -16.60176 -16.31735 -16.22456 -16.02752 -15.58559 -15.07086 -14.55703 -14.44844 -13.62595 -13.54235 -13.33367 -12.82575 -12.58673 -12.26467 -11.99817 -11.81872 -11.62332 -11.48842 -10.93675 -10.70407 -9.88363 -9.51095 -9.42317 -9.18436 -6.44584 0.66180 0.73180 1.53712 1.62077 1.79916 2.31467 2.55447 3.00466 3.35505 3.55458 3.75783 4.02092 4.15243 4.21710 4.33931 4.74319 4.81360 4.87141 4.89778 5.02894 5.09496 5.32892 5.38704 5.51904 5.67033 5.69945 5.84352 6.10819 6.25205 6.31763 6.57944 6.70152 6.85838 7.98578 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.012644 C = 0.009085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.940439 B = 2213.984281 C = 3081.384070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.005 3.995 3 Si 1.110 2.890 4 H -0.278 1.278 5 H -0.254 1.254 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.088 0.912 9 C 0.079 3.921 10 C -0.221 4.221 11 C -0.108 4.108 12 C -0.081 4.081 13 F -0.171 7.171 14 C -0.087 4.087 15 C -0.178 4.178 16 C 0.104 3.896 17 N -0.799 5.799 18 C -0.157 4.157 19 C -0.150 4.150 20 H 0.285 0.715 21 H 0.101 0.899 22 H 0.116 0.884 23 H 0.119 0.881 24 H 0.343 0.657 25 H 0.343 0.657 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.172 -1.128 1.815 5.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.213 4.213 3 Si 0.928 3.072 4 H -0.203 1.203 5 H -0.178 1.178 6 H -0.188 1.188 7 C -0.533 4.533 8 H 0.106 0.894 9 C 0.076 3.924 10 C -0.241 4.241 11 C -0.127 4.127 12 C -0.101 4.101 13 F -0.151 7.151 14 C -0.107 4.107 15 C -0.181 4.181 16 C 0.011 3.989 17 N -0.326 5.326 18 C -0.195 4.195 19 C -0.188 4.188 20 H 0.098 0.902 21 H 0.119 0.881 22 H 0.134 0.866 23 H 0.137 0.863 24 H 0.155 0.845 25 H 0.157 0.843 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.088 0.040 2.422 5.636 hybrid contribution -0.898 -1.421 -1.126 2.024 sum 4.190 -1.381 1.296 4.598 Atomic orbital electron populations 1.70589 1.09176 1.33465 1.29617 1.28365 0.95543 1.07511 0.89885 0.83068 0.74870 0.70017 0.79277 1.20263 1.17840 1.18845 1.20704 1.03758 0.93948 1.34849 0.89436 1.17845 0.91018 0.93245 0.90322 1.20767 1.04527 0.96639 1.02128 1.20569 1.00164 0.91614 1.00331 1.17376 1.04453 0.81842 1.06382 1.91283 1.84774 1.52086 1.86921 1.20366 0.95503 0.98905 0.95903 1.19183 1.03910 0.91815 1.03167 1.19344 0.86931 1.05500 0.87176 1.58851 1.16167 1.23780 1.33841 1.23164 1.02107 0.93715 1.00494 1.22834 1.02336 0.94842 0.98813 0.90213 0.88120 0.86584 0.86265 0.84462 0.84345 0.89892 0.87317 0.87920 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.40 12.33 21.82 0.27 -40.13 15 2 C 0.01 0.24 4.92 85.25 0.42 0.66 15 3 Si 1.11 39.27 30.00 68.60 2.06 41.33 15 4 H -0.28 -9.98 7.11 99.48 0.71 -9.28 15 5 H -0.25 -8.18 7.11 99.48 0.71 -7.47 15 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 7 C -0.51 -23.68 7.45 23.43 0.17 -23.50 15 8 H 0.09 3.90 6.58 -2.91 -0.02 3.88 15 9 C 0.08 3.82 5.29 -21.29 -0.11 3.71 15 10 C -0.22 -10.86 7.92 22.50 0.18 -10.68 15 11 C -0.11 -4.98 9.96 22.05 0.22 -4.76 15 12 C -0.08 -3.70 7.32 22.61 0.17 -3.54 15 13 F -0.17 -7.57 17.26 44.97 0.78 -6.80 15 14 C -0.09 -3.80 9.42 22.05 0.21 -3.60 15 15 C -0.18 -7.80 5.12 -19.64 -0.10 -7.90 15 16 C 0.10 3.87 1.84 2.78 0.01 3.88 15 17 N -0.80 -26.26 9.75 -154.51 -1.51 -27.77 15 18 C -0.16 -5.25 9.96 30.60 0.30 -4.95 15 19 C -0.15 -5.43 8.67 30.60 0.27 -5.17 15 20 H 0.29 15.02 6.71 -92.72 -0.62 14.39 15 21 H 0.10 5.12 6.50 -2.91 -0.02 5.10 15 22 H 0.12 4.87 8.06 -2.91 -0.02 4.85 15 23 H 0.12 4.72 8.06 -2.91 -0.02 4.69 15 24 H 0.34 11.02 8.90 -89.70 -0.80 10.22 15 25 H 0.34 10.88 8.79 -89.70 -0.79 10.09 15 26 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 27 H 0.11 3.21 8.14 -2.39 -0.02 3.19 15 28 H 0.10 3.33 8.14 -2.38 -0.02 3.31 15 29 H 0.07 2.97 7.92 -2.39 -0.02 2.95 15 Total: -1.00 -51.71 254.47 3.07 -48.64 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -0.25 Total: 40.58 kcal Atomic # 6 Polarization: -57.57 SS G_CDS: 1.73 Total: -55.85 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.24 Total: -67.90 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.78 Total: -6.80 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.06 Total: 41.33 kcal Total: -51.71 3.07 -48.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238562183.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.398 kcal (2) G-P(sol) polarization free energy of solvation -51.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds