Wall clock time and date at job start Mon Mar 30 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27943 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48500 * 109.47060 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.46890 * 30.00039 * 3 2 1 6 6 H 1.48497 * 109.47269 * 149.99909 * 3 2 1 7 7 C 1.50700 * 119.99621 * 179.97438 * 2 1 3 8 8 C 1.55186 * 110.53235 * 335.16604 * 7 2 1 9 9 C 1.55394 * 101.81943 * 150.31481 * 8 7 2 10 10 H 1.09002 * 110.61773 * 202.18442 * 9 8 7 11 11 C 1.50699 * 110.62330 * 79.32752 * 9 8 7 12 12 N 1.34777 * 119.99870 * 80.00465 * 11 9 8 13 13 O 1.21275 * 120.00130 * 260.26804 * 11 9 8 14 14 N 1.46377 * 103.45820 * 320.83365 * 9 8 7 15 15 N 1.40194 * 129.33927 * 215.50551 * 14 9 8 16 16 C 1.31213 * 115.40670 * 143.25112 * 15 14 9 17 17 C 1.46615 * 120.07246 * 358.75370 * 16 15 14 18 18 C 1.33465 * 122.05281 * 17.59222 * 17 16 15 19 19 C 1.47823 * 108.46964 * 32.09385 * 14 9 8 20 20 H 1.08997 * 111.25026 * 108.95737 * 19 14 9 21 21 H 0.96996 * 119.99816 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.47559 * 212.50621 * 7 2 1 23 23 H 1.09000 * 110.96042 * 32.18118 * 8 7 2 24 24 H 1.08998 * 110.99083 * 268.45393 * 8 7 2 25 25 H 0.97004 * 120.00251 * 359.97438 * 12 11 9 26 26 H 0.96996 * 119.99921 * 179.97438 * 12 11 9 27 27 H 1.08004 * 119.96229 * 178.73995 * 16 15 14 28 28 H 1.08003 * 118.97108 * 197.60905 * 17 16 15 29 29 H 1.07995 * 120.69888 * 179.73685 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2135 1.6177 0.0000 4 1 2.4610 2.0463 -1.4001 5 1 1.4110 2.6526 0.7001 6 1 3.5110 1.4401 0.7000 7 6 2.0328 -1.3052 0.0006 8 6 1.1627 -2.4356 0.6115 9 6 1.6932 -3.6875 -0.1410 10 1 0.9519 -4.4865 -0.1269 11 6 2.9912 -4.1589 0.4621 12 7 2.9813 -4.8993 1.5883 13 8 4.0449 -3.8681 -0.0631 14 7 1.9053 -3.2006 -1.5051 15 7 1.7229 -3.8669 -2.7250 16 6 1.2573 -3.1293 -3.7052 17 6 0.9398 -1.7166 -3.4748 18 6 1.4125 -1.0470 -2.4215 19 6 2.2958 -1.7764 -1.4385 20 1 3.3460 -1.6422 -1.6976 21 1 -0.4850 0.8400 0.0004 22 1 2.9693 -1.2046 0.5493 23 1 0.1061 -2.2721 0.3997 24 1 1.3342 -2.5240 1.6842 25 1 2.1387 -5.1284 2.0108 26 1 3.8168 -5.2031 1.9763 27 1 1.1080 -3.5632 -4.6829 28 1 0.3032 -1.2018 -4.1793 29 1 1.1680 -0.0053 -2.2754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238563421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:50 Heat of formation + Delta-G solvation = 70.398731 kcal Electronic energy + Delta-G solvation = -15752.380613 eV Core-core repulsion = 13178.602477 eV Total energy + Delta-G solvation = -2573.778136 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.61410 -39.55477 -37.53538 -35.51456 -34.52982 -33.39728 -30.38848 -29.95539 -24.73168 -24.39997 -24.11387 -21.48406 -20.40207 -19.15370 -18.11088 -17.93696 -17.51201 -17.08156 -16.91294 -15.93723 -15.71769 -14.97336 -14.82551 -14.59609 -14.13462 -13.96954 -13.68649 -13.10531 -12.94415 -12.73304 -12.44365 -12.18037 -11.96992 -11.46314 -11.33709 -10.84751 -10.59516 -10.21561 -9.96922 -8.53959 0.31392 0.64696 0.91442 1.28715 1.49887 1.57984 1.74794 1.76817 1.98375 2.64173 3.20315 3.47637 3.60321 3.76574 3.90443 3.95913 3.97003 4.16017 4.40235 4.42611 4.67089 4.71491 4.81226 4.89308 5.15044 5.25444 5.31577 5.50287 5.83574 6.03097 6.40610 6.72890 7.25280 7.38756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C 0.005 3.995 3 Si 0.923 3.077 4 H -0.233 1.233 5 H -0.243 1.243 6 H -0.229 1.229 7 C -0.067 4.067 8 C -0.110 4.110 9 C 0.157 3.843 10 H 0.107 0.893 11 C 0.505 3.495 12 N -0.856 5.856 13 O -0.525 6.525 14 N -0.530 5.530 15 N -0.185 5.185 16 C 0.058 3.942 17 C -0.150 4.150 18 C -0.138 4.138 19 C 0.173 3.827 20 H 0.087 0.913 21 H 0.340 0.660 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.401 0.599 26 H 0.402 0.598 27 H 0.175 0.825 28 H 0.127 0.873 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 1.922 2.764 4.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.234 5.234 2 C -0.244 4.244 3 Si 0.738 3.262 4 H -0.156 1.156 5 H -0.166 1.166 6 H -0.151 1.151 7 C -0.088 4.088 8 C -0.149 4.149 9 C 0.047 3.953 10 H 0.125 0.875 11 C 0.287 3.713 12 N -0.421 5.421 13 O -0.400 6.400 14 N -0.344 5.344 15 N 0.012 4.988 16 C -0.150 4.150 17 C -0.171 4.171 18 C -0.164 4.164 19 C 0.066 3.934 20 H 0.105 0.895 21 H 0.157 0.843 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.108 0.892 25 H 0.230 0.770 26 H 0.233 0.767 27 H 0.192 0.808 28 H 0.145 0.855 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.170 1.161 2.563 3.553 hybrid contribution -0.309 1.115 0.137 1.165 sum -2.479 2.276 2.700 4.315 Atomic orbital electron populations 1.68114 1.09902 1.37034 1.08361 1.29920 0.96760 1.05174 0.92551 0.85892 0.81802 0.75145 0.83382 1.15627 1.16596 1.15133 1.21414 0.99100 0.92245 0.95999 1.23024 1.02072 0.90507 0.99301 1.21301 0.93895 0.98778 0.81330 0.87544 1.21234 0.92015 0.77738 0.80323 1.43898 1.12776 1.56799 1.28600 1.90748 1.32818 1.55710 1.60684 1.50295 1.76049 1.07839 1.00192 1.76501 1.09283 1.22503 0.90540 1.25566 0.95891 0.93410 1.00108 1.21939 1.02131 0.94211 0.98827 1.24135 0.99462 0.99386 0.93418 1.20752 0.97942 0.81956 0.92780 0.89508 0.84313 0.87446 0.87162 0.89226 0.77049 0.76654 0.80824 0.85535 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 0.51 11.95 56.23 0.67 1.18 15 2 C 0.01 -0.01 2.91 -13.90 -0.04 -0.05 15 3 Si 0.92 -1.73 28.80 -169.99 -4.90 -6.62 15 4 H -0.23 0.30 7.11 56.52 0.40 0.70 15 5 H -0.24 0.33 7.11 56.52 0.40 0.73 15 6 H -0.23 0.28 7.11 56.52 0.40 0.68 15 7 C -0.07 0.02 2.60 -90.25 -0.23 -0.22 15 8 C -0.11 0.11 5.94 -24.30 -0.14 -0.03 15 9 C 0.16 0.14 3.95 -67.88 -0.27 -0.13 15 10 H 0.11 -0.05 8.14 -51.93 -0.42 -0.47 15 11 C 0.50 0.99 7.11 -10.99 -0.08 0.91 15 12 N -0.86 1.73 8.87 31.22 0.28 2.01 15 13 O -0.53 -3.44 17.02 5.56 0.09 -3.34 15 14 N -0.53 -1.77 3.40 -100.03 -0.34 -2.11 15 15 N -0.19 -0.80 12.22 32.18 0.39 -0.41 15 16 C 0.06 0.10 11.50 -14.44 -0.17 -0.07 15 17 C -0.15 -0.14 10.00 -37.87 -0.38 -0.52 15 18 C -0.14 -0.14 8.60 -35.86 -0.31 -0.45 15 19 C 0.17 0.34 3.46 -67.88 -0.24 0.10 15 20 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 15 21 H 0.34 -0.77 8.23 -40.82 -0.34 -1.11 15 22 H 0.11 -0.10 7.86 -51.93 -0.41 -0.51 15 23 H 0.11 -0.02 6.97 -51.93 -0.36 -0.38 15 24 H 0.09 -0.27 8.07 -51.93 -0.42 -0.69 15 25 H 0.40 -2.05 8.83 -40.82 -0.36 -2.41 15 26 H 0.40 -0.97 8.93 -40.82 -0.36 -1.34 15 27 H 0.17 -0.22 8.06 -52.48 -0.42 -0.64 15 28 H 0.13 -0.14 8.06 -52.48 -0.42 -0.56 15 29 H 0.12 -0.06 5.90 -52.49 -0.31 -0.37 15 LS Contribution 246.85 15.07 3.72 3.72 Total: 0.00 -7.56 246.85 -4.98 -12.54 By element: Atomic # 1 Polarization: -3.48 SS G_CDS: -3.05 Total: -6.52 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.85 Total: -0.45 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: 1.00 Total: 0.68 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: 0.09 Total: -3.34 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: -4.90 Total: -6.62 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -7.56 -4.98 -12.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238563421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.939 kcal (2) G-P(sol) polarization free energy of solvation -7.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds