Wall clock time and date at job start Mon Mar 30 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27943 * 1 3 3 Si 1.86797 * 120.00305 * 2 1 4 4 H 1.48500 * 109.47060 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.46890 * 30.00039 * 3 2 1 6 6 H 1.48497 * 109.47269 * 149.99909 * 3 2 1 7 7 C 1.50700 * 119.99621 * 179.97438 * 2 1 3 8 8 C 1.55186 * 110.53235 * 335.16604 * 7 2 1 9 9 C 1.55394 * 101.81943 * 150.31481 * 8 7 2 10 10 H 1.09002 * 110.61773 * 202.18442 * 9 8 7 11 11 C 1.50699 * 110.62330 * 79.32752 * 9 8 7 12 12 N 1.34777 * 119.99870 * 80.00465 * 11 9 8 13 13 O 1.21275 * 120.00130 * 260.26804 * 11 9 8 14 14 N 1.46377 * 103.45820 * 320.83365 * 9 8 7 15 15 N 1.40194 * 129.33927 * 215.50551 * 14 9 8 16 16 C 1.31213 * 115.40670 * 143.25112 * 15 14 9 17 17 C 1.46615 * 120.07246 * 358.75370 * 16 15 14 18 18 C 1.33465 * 122.05281 * 17.59222 * 17 16 15 19 19 C 1.47823 * 108.46964 * 32.09385 * 14 9 8 20 20 H 1.08997 * 111.25026 * 108.95737 * 19 14 9 21 21 H 0.96996 * 119.99816 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.47559 * 212.50621 * 7 2 1 23 23 H 1.09000 * 110.96042 * 32.18118 * 8 7 2 24 24 H 1.08998 * 110.99083 * 268.45393 * 8 7 2 25 25 H 0.97004 * 120.00251 * 359.97438 * 12 11 9 26 26 H 0.96996 * 119.99921 * 179.97438 * 12 11 9 27 27 H 1.08004 * 119.96229 * 178.73995 * 16 15 14 28 28 H 1.08003 * 118.97108 * 197.60905 * 17 16 15 29 29 H 1.07995 * 120.69888 * 179.73685 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2135 1.6177 0.0000 4 1 2.4610 2.0463 -1.4001 5 1 1.4110 2.6526 0.7001 6 1 3.5110 1.4401 0.7000 7 6 2.0328 -1.3052 0.0006 8 6 1.1627 -2.4356 0.6115 9 6 1.6932 -3.6875 -0.1410 10 1 0.9519 -4.4865 -0.1269 11 6 2.9912 -4.1589 0.4621 12 7 2.9813 -4.8993 1.5883 13 8 4.0449 -3.8681 -0.0631 14 7 1.9053 -3.2006 -1.5051 15 7 1.7229 -3.8669 -2.7250 16 6 1.2573 -3.1293 -3.7052 17 6 0.9398 -1.7166 -3.4748 18 6 1.4125 -1.0470 -2.4215 19 6 2.2958 -1.7764 -1.4385 20 1 3.3460 -1.6422 -1.6976 21 1 -0.4850 0.8400 0.0004 22 1 2.9693 -1.2046 0.5493 23 1 0.1061 -2.2721 0.3997 24 1 1.3342 -2.5240 1.6842 25 1 2.1387 -5.1284 2.0108 26 1 3.8168 -5.2031 1.9763 27 1 1.1080 -3.5632 -4.6829 28 1 0.3032 -1.2018 -4.1793 29 1 1.1680 -0.0053 -2.2754 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238563421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:49 Heat of formation + Delta-G solvation = 68.294169 kcal Electronic energy + Delta-G solvation = -15752.471874 eV Core-core repulsion = 13178.602477 eV Total energy + Delta-G solvation = -2573.869396 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.67683 -39.68557 -37.54466 -35.54492 -34.58343 -33.45857 -30.42435 -29.98043 -24.77030 -24.42653 -24.17646 -21.53780 -20.37466 -19.20745 -18.16847 -17.87633 -17.53195 -17.13683 -16.94678 -15.96199 -15.82537 -14.97170 -14.86300 -14.58041 -14.17328 -14.00075 -13.73370 -13.05005 -12.96155 -12.70728 -12.42187 -12.13324 -11.96007 -11.49202 -11.34538 -10.99866 -10.63775 -10.30346 -9.87637 -8.66382 0.23089 0.74566 1.04012 1.42419 1.44881 1.65738 1.72163 1.87709 1.91456 2.63495 3.25784 3.48614 3.61547 3.75842 3.88567 4.00000 4.03304 4.13871 4.39983 4.47131 4.66257 4.75571 4.83030 4.93100 5.16245 5.25674 5.28903 5.45407 5.87226 6.00196 6.48441 6.87582 7.15899 7.36683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.242 1.242 5 H -0.246 1.246 6 H -0.241 1.241 7 C -0.069 4.069 8 C -0.099 4.099 9 C 0.152 3.848 10 H 0.118 0.882 11 C 0.503 3.497 12 N -0.835 5.835 13 O -0.580 6.580 14 N -0.544 5.544 15 N -0.231 5.231 16 C 0.063 3.937 17 C -0.159 4.159 18 C -0.141 4.141 19 C 0.167 3.833 20 H 0.063 0.937 21 H 0.348 0.652 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.418 0.582 26 H 0.407 0.593 27 H 0.199 0.801 28 H 0.149 0.851 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 2.303 3.277 5.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.244 5.244 2 C -0.240 4.240 3 Si 0.772 3.228 4 H -0.165 1.165 5 H -0.169 1.169 6 H -0.163 1.163 7 C -0.090 4.090 8 C -0.138 4.138 9 C 0.043 3.957 10 H 0.136 0.864 11 C 0.286 3.714 12 N -0.400 5.400 13 O -0.458 6.458 14 N -0.358 5.358 15 N -0.034 5.034 16 C -0.145 4.145 17 C -0.180 4.180 18 C -0.166 4.166 19 C 0.059 3.941 20 H 0.081 0.919 21 H 0.166 0.834 22 H 0.129 0.871 23 H 0.124 0.876 24 H 0.131 0.869 25 H 0.250 0.750 26 H 0.238 0.762 27 H 0.215 0.785 28 H 0.166 0.834 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.202 1.518 3.118 4.720 hybrid contribution -0.001 0.964 -0.029 0.964 sum -3.203 2.481 3.088 5.094 Atomic orbital electron populations 1.68087 1.10112 1.37871 1.08337 1.29902 0.96699 1.04904 0.92461 0.85417 0.80752 0.74204 0.82449 1.16516 1.16934 1.16313 1.21439 0.99687 0.93054 0.94779 1.23001 1.01370 0.89113 1.00309 1.21485 0.93513 0.99924 0.80762 0.86445 1.21503 0.91669 0.77539 0.80698 1.43746 1.14003 1.55034 1.27241 1.90722 1.34538 1.58075 1.62480 1.50441 1.76447 1.08383 1.00548 1.76408 1.11280 1.24074 0.91638 1.26065 0.94095 0.93809 1.00488 1.22218 1.02495 0.94053 0.99242 1.24287 0.99122 1.00008 0.93216 1.20729 0.96900 0.81997 0.94426 0.91929 0.83357 0.87121 0.87595 0.86918 0.75019 0.76186 0.78474 0.83369 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.63 1.44 11.95 24.11 0.29 1.73 15 2 C 0.01 -0.03 2.91 88.67 0.26 0.23 15 3 Si 0.96 -3.70 28.80 68.60 1.98 -1.73 15 4 H -0.24 0.62 7.11 99.48 0.71 1.33 15 5 H -0.25 0.82 7.11 99.48 0.71 1.53 15 6 H -0.24 0.52 7.11 99.48 0.71 1.22 15 7 C -0.07 0.01 2.60 -10.56 -0.03 -0.02 15 8 C -0.10 0.22 5.94 32.17 0.19 0.41 15 9 C 0.15 0.35 3.95 45.09 0.18 0.53 15 10 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 15 11 C 0.50 2.37 7.11 87.66 0.62 2.99 15 12 N -0.84 3.55 8.87 -173.54 -1.54 2.01 15 13 O -0.58 -8.71 17.02 -3.01 -0.05 -8.76 15 14 N -0.54 -4.29 3.40 -470.39 -1.60 -5.89 15 15 N -0.23 -2.29 12.22 -52.09 -0.64 -2.93 15 16 C 0.06 0.25 11.50 86.97 1.00 1.25 15 17 C -0.16 -0.28 10.00 23.38 0.23 -0.05 15 18 C -0.14 -0.34 8.60 24.68 0.21 -0.12 15 19 C 0.17 0.86 3.46 44.30 0.15 1.01 15 20 H 0.06 0.56 8.14 -2.39 -0.02 0.54 15 21 H 0.35 -1.86 8.23 -92.71 -0.76 -2.62 15 22 H 0.11 -0.12 7.86 -2.39 -0.02 -0.14 15 23 H 0.11 -0.09 6.97 -2.39 -0.02 -0.11 15 24 H 0.11 -0.82 8.07 -2.39 -0.02 -0.84 15 25 H 0.42 -4.68 8.83 -92.71 -0.82 -5.50 15 26 H 0.41 -2.01 8.93 -92.71 -0.83 -2.84 15 27 H 0.20 -0.53 8.06 -2.91 -0.02 -0.55 15 28 H 0.15 -0.47 8.06 -2.91 -0.02 -0.50 15 29 H 0.14 -0.15 5.90 -2.91 -0.02 -0.17 15 Total: 0.00 -18.89 246.85 0.81 -18.08 By element: Atomic # 1 Polarization: -8.29 SS G_CDS: -0.45 Total: -8.73 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 2.82 Total: 6.23 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -3.49 Total: -5.09 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.05 Total: -8.76 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 1.98 Total: -1.73 kcal Total: -18.89 0.81 -18.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238563421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.374 kcal (2) G-P(sol) polarization free energy of solvation -18.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds