Wall clock time and date at job start Mon Mar 30 2020 03:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99692 * 2 1 4 4 H 1.09000 * 109.47295 * 244.99775 * 3 2 1 5 5 N 1.46901 * 109.47119 * 4.99986 * 3 2 1 6 6 C 1.50706 * 109.47268 * 124.99662 * 3 2 1 7 7 C 1.36580 * 120.11606 * 265.00324 * 6 3 2 8 8 C 1.38917 * 120.22374 * 179.97438 * 7 6 3 9 9 F 1.35098 * 119.78044 * 180.02562 * 8 7 6 10 10 C 1.38961 * 120.44025 * 0.04659 * 8 7 6 11 11 C 1.36549 * 120.21954 * 359.97009 * 10 8 7 12 12 C 1.40752 * 120.10936 * 84.72371 * 6 3 2 13 13 C 1.41314 * 120.21741 * 0.02562 * 12 6 3 14 14 H 1.08002 * 119.99707 * 333.92372 * 13 12 6 15 15 C 1.39911 * 120.00050 * 153.92381 * 13 12 6 16 16 N 1.30847 * 120.00173 * 343.53835 * 15 13 12 17 17 Si 1.86804 * 119.99997 * 163.53484 * 15 13 12 18 18 H 1.48501 * 109.46919 * 90.00045 * 17 15 13 19 19 H 1.48497 * 109.47277 * 210.00088 * 17 15 13 20 20 H 1.48499 * 109.47033 * 330.00408 * 17 15 13 21 21 H 1.08011 * 119.99662 * 179.97438 * 1 2 3 22 22 H 1.07998 * 120.00787 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00787 * 179.97438 * 2 1 3 24 24 H 1.00899 * 110.99983 * 59.99791 * 5 3 2 25 25 H 1.00903 * 111.00155 * 183.95309 * 5 3 2 26 26 H 1.08006 * 119.88505 * 0.02562 * 7 6 3 27 27 H 1.07998 * 119.88924 * 179.97438 * 10 8 7 28 28 H 1.08000 * 120.11361 * 180.02562 * 11 10 8 29 29 H 0.97000 * 120.00405 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 2.6212 1.4027 -0.9313 5 7 1.1133 2.4190 0.1207 6 6 3.0203 1.3328 1.1639 7 6 2.6519 1.9213 2.3401 8 6 3.5320 1.9476 3.4146 9 9 3.1581 2.5316 4.5741 10 6 4.7946 1.3776 3.3047 11 6 5.1817 0.7849 2.1371 12 6 4.2946 0.7471 1.0445 13 6 4.6835 0.1310 -0.1664 14 1 3.9344 -0.2711 -0.8325 15 6 6.0387 0.0420 -0.5023 16 7 6.9164 0.7908 0.1151 17 14 6.5953 -1.1459 -1.8321 18 1 6.5692 -0.4615 -3.1497 19 1 7.9772 -1.6043 -1.5397 20 1 5.6820 -2.3163 -1.8642 21 1 -0.5400 -0.9354 -0.0004 22 1 -0.5401 0.9352 -0.0004 23 1 1.8501 -0.9352 0.0004 24 1 0.5835 2.3513 0.9768 25 1 1.5877 3.3074 0.0584 26 1 1.6727 2.3670 2.4354 27 1 5.4718 1.4035 4.1455 28 1 6.1632 0.3420 2.0536 29 1 7.8559 0.7294 -0.1180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238568616.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:12 Heat of formation + Delta-G solvation = -12.387955 kcal Electronic energy + Delta-G solvation = -14668.084389 eV Core-core repulsion = 12084.452131 eV Total energy + Delta-G solvation = -2583.632258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.53033 -38.37352 -35.42424 -33.70373 -30.84648 -29.82842 -29.01891 -25.41958 -24.39666 -21.10819 -20.42701 -18.45560 -17.52464 -16.25822 -16.09193 -15.40136 -14.70863 -14.28649 -14.09700 -13.77015 -13.18949 -12.87012 -12.42586 -12.22544 -11.92008 -11.72556 -11.27848 -11.07539 -10.91438 -10.69448 -10.15717 -9.97270 -9.76144 -9.30144 -8.79313 -8.18664 -7.71279 -7.37859 -6.94310 -4.52621 2.52160 2.67399 2.98727 3.00182 3.00741 3.06557 3.80137 4.39276 5.19216 5.34406 5.65671 5.76880 5.89567 6.01300 6.02664 6.33202 6.47635 6.56846 6.84842 6.96964 7.05216 7.20815 7.28149 7.40396 7.52002 7.68219 7.74100 7.90522 7.96471 8.06594 8.38978 8.67425 8.73032 9.99382 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.021775 B = 0.012073 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.592402 B = 2318.588777 C = 3345.472221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.123 4.123 3 C 0.175 3.825 4 H 0.098 0.902 5 N -0.843 5.843 6 C -0.205 4.205 7 C -0.112 4.112 8 C -0.049 4.049 9 F -0.175 7.175 10 C -0.128 4.128 11 C -0.141 4.141 12 C 0.114 3.886 13 C -0.451 4.451 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.788 5.788 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.259 1.259 21 H 0.082 0.918 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.333 0.667 25 H 0.340 0.660 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 -1.014 -1.020 3.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.142 4.142 3 C 0.064 3.936 4 H 0.115 0.885 5 N -0.372 5.372 6 C -0.208 4.208 7 C -0.132 4.132 8 C -0.069 4.069 9 F -0.154 7.154 10 C -0.147 4.147 11 C -0.160 4.160 12 C 0.110 3.890 13 C -0.480 4.480 14 H 0.103 0.897 15 C -0.144 4.144 16 N -0.412 5.412 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.182 1.182 21 H 0.101 0.899 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.146 0.854 25 H 0.152 0.848 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.144 0.856 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.691 -1.223 -1.664 4.229 hybrid contribution 0.993 -0.149 0.623 1.182 sum -2.698 -1.372 -1.041 3.201 Atomic orbital electron populations 1.23679 0.96196 1.01134 1.04064 1.23012 0.95680 0.98159 0.97336 1.19047 0.89247 0.88255 0.97042 0.88470 1.59198 1.29238 1.05598 1.43163 1.19922 0.98205 1.07341 0.95374 1.20011 0.97601 1.02521 0.93035 1.17275 0.96391 1.10182 0.83007 1.91278 1.92224 1.83791 1.48139 1.20486 0.94230 1.01171 0.98793 1.21002 1.01184 1.02686 0.91146 1.17468 0.89848 0.88819 0.92817 1.19618 0.92161 1.32441 1.03764 0.89675 1.25972 0.96685 0.94486 0.97233 1.69806 1.03863 1.30627 1.36907 0.86288 0.78656 0.81155 0.80639 1.19276 1.20006 1.18248 0.89914 0.87617 0.87420 0.85396 0.84829 0.88479 0.88254 0.85591 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.45 13.88 29.02 0.40 -3.05 15 2 C -0.12 -2.26 9.14 -36.02 -0.33 -2.59 15 3 C 0.17 3.41 2.87 -70.01 -0.20 3.21 15 4 H 0.10 2.03 7.08 -51.93 -0.37 1.66 15 5 N -0.84 -14.16 7.55 -6.65 -0.05 -14.21 15 6 C -0.21 -4.58 5.06 -104.27 -0.53 -5.11 15 7 C -0.11 -2.48 9.20 -39.93 -0.37 -2.84 15 8 C -0.05 -1.14 7.32 -39.06 -0.29 -1.43 15 9 F -0.17 -3.97 17.26 2.25 0.04 -3.93 15 10 C -0.13 -3.00 9.96 -39.92 -0.40 -3.40 15 11 C -0.14 -3.49 8.64 -39.23 -0.34 -3.83 15 12 C 0.11 2.80 5.56 -106.81 -0.59 2.20 15 13 C -0.45 -10.86 8.13 -37.79 -0.31 -11.16 15 14 H 0.09 1.95 6.52 -52.49 -0.34 1.61 15 15 C 0.08 1.75 5.16 -17.35 -0.09 1.66 15 16 N -0.79 -19.04 10.96 55.55 0.61 -18.43 15 17 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 15 18 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 19 H -0.28 -5.22 7.11 56.52 0.40 -4.81 15 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 21 H 0.08 1.19 8.06 -52.48 -0.42 0.77 15 22 H 0.11 1.66 6.46 -52.49 -0.34 1.32 15 23 H 0.11 2.01 7.89 -52.49 -0.41 1.60 15 24 H 0.33 5.33 6.47 -39.29 -0.25 5.08 15 25 H 0.34 5.50 9.06 -39.29 -0.36 5.15 15 26 H 0.10 1.91 6.26 -52.48 -0.33 1.58 15 27 H 0.10 2.13 8.06 -52.49 -0.42 1.71 15 28 H 0.13 3.18 6.20 -52.49 -0.33 2.85 15 29 H 0.28 6.25 8.30 -40.82 -0.34 5.92 15 LS Contribution 251.95 15.07 3.80 3.80 Total: -1.00 -25.13 251.95 -6.38 -31.51 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -2.71 Total: 15.17 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -3.04 Total: -26.35 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.56 Total: -32.64 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -25.13 -6.38 -31.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238568616.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.120 kcal (2) G-P(sol) polarization free energy of solvation -25.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds