Wall clock time and date at job start Mon Mar 30 2020 03:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 119.99692 * 2 1 4 4 H 1.09000 * 109.47295 * 244.99775 * 3 2 1 5 5 N 1.46901 * 109.47119 * 4.99986 * 3 2 1 6 6 C 1.50706 * 109.47268 * 124.99662 * 3 2 1 7 7 C 1.36580 * 120.11606 * 265.00324 * 6 3 2 8 8 C 1.38917 * 120.22374 * 179.97438 * 7 6 3 9 9 F 1.35098 * 119.78044 * 180.02562 * 8 7 6 10 10 C 1.38961 * 120.44025 * 0.04659 * 8 7 6 11 11 C 1.36549 * 120.21954 * 359.97009 * 10 8 7 12 12 C 1.40752 * 120.10936 * 84.72371 * 6 3 2 13 13 C 1.41314 * 120.21741 * 0.02562 * 12 6 3 14 14 H 1.08002 * 119.99707 * 333.92372 * 13 12 6 15 15 C 1.39911 * 120.00050 * 153.92381 * 13 12 6 16 16 N 1.30847 * 120.00173 * 343.53835 * 15 13 12 17 17 Si 1.86804 * 119.99997 * 163.53484 * 15 13 12 18 18 H 1.48501 * 109.46919 * 90.00045 * 17 15 13 19 19 H 1.48497 * 109.47277 * 210.00088 * 17 15 13 20 20 H 1.48499 * 109.47033 * 330.00408 * 17 15 13 21 21 H 1.08011 * 119.99662 * 179.97438 * 1 2 3 22 22 H 1.07998 * 120.00787 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00787 * 179.97438 * 2 1 3 24 24 H 1.00899 * 110.99983 * 59.99791 * 5 3 2 25 25 H 1.00903 * 111.00155 * 183.95309 * 5 3 2 26 26 H 1.08006 * 119.88505 * 0.02562 * 7 6 3 27 27 H 1.07998 * 119.88924 * 179.97438 * 10 8 7 28 28 H 1.08000 * 120.11361 * 180.02562 * 11 10 8 29 29 H 0.97000 * 120.00405 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 2.6212 1.4027 -0.9313 5 7 1.1133 2.4190 0.1207 6 6 3.0203 1.3328 1.1639 7 6 2.6519 1.9213 2.3401 8 6 3.5320 1.9476 3.4146 9 9 3.1581 2.5316 4.5741 10 6 4.7946 1.3776 3.3047 11 6 5.1817 0.7849 2.1371 12 6 4.2946 0.7471 1.0445 13 6 4.6835 0.1310 -0.1664 14 1 3.9344 -0.2711 -0.8325 15 6 6.0387 0.0420 -0.5023 16 7 6.9164 0.7908 0.1151 17 14 6.5953 -1.1459 -1.8321 18 1 6.5692 -0.4615 -3.1497 19 1 7.9772 -1.6043 -1.5397 20 1 5.6820 -2.3163 -1.8642 21 1 -0.5400 -0.9354 -0.0004 22 1 -0.5401 0.9352 -0.0004 23 1 1.8501 -0.9352 0.0004 24 1 0.5835 2.3513 0.9768 25 1 1.5877 3.3074 0.0584 26 1 1.6727 2.3670 2.4354 27 1 5.4718 1.4035 4.1455 28 1 6.1632 0.3420 2.0536 29 1 7.8559 0.7294 -0.1180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238568616.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:12 Heat of formation + Delta-G solvation = -26.037064 kcal Electronic energy + Delta-G solvation = -14668.676259 eV Core-core repulsion = 12084.452131 eV Total energy + Delta-G solvation = -2584.224128 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.34221 -40.08327 -36.99738 -35.48267 -32.30946 -31.60213 -30.69856 -27.16025 -26.02611 -22.91177 -22.12528 -19.90964 -19.32368 -17.99550 -17.59985 -17.07662 -16.46577 -16.09769 -15.77696 -15.30649 -14.71669 -14.51903 -13.99643 -13.92236 -13.64738 -13.41581 -12.84604 -12.74252 -12.53000 -12.22498 -11.72669 -11.69660 -11.49444 -11.05127 -10.17454 -9.69369 -9.46992 -9.20724 -8.70068 -6.36827 0.73533 0.89113 1.40957 1.47091 1.54942 1.61294 2.18997 2.61440 3.54773 3.75429 3.93210 4.17659 4.24109 4.34599 4.65513 4.69142 4.81749 5.04837 5.12660 5.24697 5.29857 5.51995 5.71432 5.87607 5.88791 5.97103 5.99581 6.20515 6.38577 6.57405 6.63210 6.86400 6.91043 8.26028 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.021775 B = 0.012073 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.592402 B = 2318.588777 C = 3345.472221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.153 4.153 3 C 0.183 3.817 4 H 0.079 0.921 5 N -0.831 5.831 6 C -0.203 4.203 7 C -0.112 4.112 8 C -0.065 4.065 9 F -0.172 7.172 10 C -0.134 4.134 11 C -0.165 4.165 12 C 0.088 3.912 13 C -0.470 4.470 14 H 0.090 0.910 15 C 0.037 3.963 16 N -0.818 5.818 17 Si 0.978 3.022 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.256 1.256 21 H 0.105 0.895 22 H 0.114 0.886 23 H 0.097 0.903 24 H 0.340 0.660 25 H 0.344 0.656 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 -1.346 -1.811 5.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.172 4.172 3 C 0.072 3.928 4 H 0.097 0.903 5 N -0.360 5.360 6 C -0.206 4.206 7 C -0.131 4.131 8 C -0.085 4.085 9 F -0.151 7.151 10 C -0.153 4.153 11 C -0.184 4.184 12 C 0.085 3.915 13 C -0.499 4.499 14 H 0.108 0.892 15 C -0.180 4.180 16 N -0.443 5.443 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.180 1.180 21 H 0.123 0.877 22 H 0.132 0.868 23 H 0.115 0.885 24 H 0.155 0.845 25 H 0.157 0.843 26 H 0.141 0.859 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.979 -1.540 -2.442 5.756 hybrid contribution 1.313 0.000 0.897 1.590 sum -3.666 -1.540 -1.545 4.266 Atomic orbital electron populations 1.23906 0.95276 1.02607 1.00257 1.22864 0.96474 0.97074 1.00782 1.18873 0.89167 0.89903 0.94902 0.90291 1.59159 1.28317 1.05056 1.43486 1.20304 0.97963 1.05878 0.96491 1.20260 0.98455 1.02004 0.92391 1.17464 0.96682 1.10700 0.83625 1.91278 1.92154 1.83731 1.47960 1.20642 0.94847 1.00945 0.98893 1.20969 1.01144 1.04270 0.92056 1.17831 0.90980 0.89542 0.93146 1.19857 0.93036 1.33036 1.03932 0.89222 1.26786 0.96385 0.95535 0.99266 1.69859 1.04454 1.31716 1.38277 0.85248 0.78234 0.78830 0.77832 1.18689 1.19422 1.17958 0.87669 0.86771 0.88450 0.84545 0.84336 0.85910 0.86969 0.86912 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.36 13.88 67.79 0.94 -4.42 15 2 C -0.15 -5.38 9.14 25.65 0.23 -5.14 15 3 C 0.18 6.94 2.87 43.42 0.12 7.07 15 4 H 0.08 3.28 7.08 -2.39 -0.02 3.27 15 5 N -0.83 -26.07 7.55 -174.94 -1.32 -27.40 15 6 C -0.20 -9.00 5.06 -19.64 -0.10 -9.10 15 7 C -0.11 -4.81 9.20 22.04 0.20 -4.61 15 8 C -0.06 -3.01 7.32 22.61 0.17 -2.84 15 9 F -0.17 -7.61 17.26 44.97 0.78 -6.84 15 10 C -0.13 -6.39 9.96 22.05 0.22 -6.17 15 11 C -0.16 -8.37 8.64 22.50 0.19 -8.18 15 12 C 0.09 4.40 5.56 -21.28 -0.12 4.29 15 13 C -0.47 -22.91 8.13 23.43 0.19 -22.72 15 14 H 0.09 4.16 6.52 -2.91 -0.02 4.14 15 15 C 0.04 1.71 5.16 85.24 0.44 2.15 15 16 N -0.82 -40.16 10.96 21.82 0.24 -39.92 15 17 Si 0.98 35.57 29.59 68.60 2.03 37.60 15 18 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 19 H -0.27 -9.49 7.11 99.48 0.71 -8.78 15 20 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 21 H 0.11 2.62 8.06 -2.91 -0.02 2.59 15 22 H 0.11 3.15 6.46 -2.91 -0.02 3.13 15 23 H 0.10 3.59 7.89 -2.91 -0.02 3.57 15 24 H 0.34 9.90 6.47 -89.69 -0.58 9.32 15 25 H 0.34 10.47 9.06 -89.69 -0.81 9.66 15 26 H 0.12 4.54 6.26 -2.91 -0.02 4.52 15 27 H 0.11 4.87 8.06 -2.91 -0.02 4.85 15 28 H 0.11 5.92 6.20 -2.91 -0.02 5.90 15 29 H 0.29 12.94 8.30 -92.71 -0.77 12.17 15 Total: -1.00 -52.88 251.95 4.02 -48.86 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.20 Total: 37.37 kcal Atomic # 6 Polarization: -52.16 SS G_CDS: 2.49 Total: -49.67 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -1.08 Total: -67.32 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.78 Total: -6.84 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Total: -52.88 4.02 -48.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238568616.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.823 kcal (2) G-P(sol) polarization free energy of solvation -52.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds