Wall clock time and date at job start Mon Mar 30 2020 03:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00098 * 2 1 4 4 H 1.09001 * 109.46783 * 5.00241 * 3 2 1 5 5 N 1.46894 * 109.47405 * 245.00578 * 3 2 1 6 6 C 1.50697 * 109.47129 * 125.00018 * 3 2 1 7 7 C 1.36590 * 120.11128 * 100.26293 * 6 3 2 8 8 C 1.38919 * 120.21508 * 180.27862 * 7 6 3 9 9 F 1.35110 * 119.77478 * 179.71586 * 8 7 6 10 10 C 1.38963 * 120.44486 * 359.69279 * 8 7 6 11 11 C 1.36543 * 120.21945 * 0.04593 * 10 8 7 12 12 C 1.40749 * 120.11355 * 280.00288 * 6 3 2 13 13 C 1.41309 * 120.21703 * 0.02562 * 12 6 3 14 14 H 1.08003 * 120.00127 * 333.48115 * 13 12 6 15 15 C 1.39920 * 120.00250 * 153.20895 * 13 12 6 16 16 N 1.30858 * 119.99802 * 344.07217 * 15 13 12 17 17 Si 1.86799 * 120.00337 * 164.07804 * 15 13 12 18 18 H 1.48500 * 109.47269 * 89.99645 * 17 15 13 19 19 H 1.48494 * 109.47173 * 209.99827 * 17 15 13 20 20 H 1.48503 * 109.46830 * 329.99703 * 17 15 13 21 21 H 1.07996 * 119.99689 * 180.02562 * 1 2 3 22 22 H 1.07998 * 119.99695 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.00418 * 180.02562 * 2 1 3 24 24 H 1.00902 * 111.00382 * 176.04901 * 5 3 2 25 25 H 1.00909 * 110.99752 * 299.99391 * 5 3 2 26 26 H 1.07996 * 119.88827 * 359.97438 * 7 6 3 27 27 H 1.07999 * 119.88977 * 180.02562 * 10 8 7 28 28 H 1.07996 * 120.11122 * 179.97438 * 11 10 8 29 29 H 0.97001 * 119.99930 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1316 0.0896 5 7 2.8152 1.4366 -1.2552 6 6 3.0205 1.3327 1.1638 7 6 4.3448 1.0610 0.9687 8 6 5.2278 1.0801 2.0410 9 9 6.5349 0.8044 1.8388 10 6 4.7758 1.3814 3.3200 11 6 3.4566 1.6610 3.5347 12 6 2.5536 1.6438 2.4547 13 6 1.1863 1.9312 2.6664 14 1 0.5876 2.3310 1.8613 15 6 0.6067 1.6926 3.9173 16 7 1.2182 0.9294 4.7868 17 14 -1.0399 2.4634 4.3462 18 1 -2.1359 1.5473 3.9404 19 1 -1.1092 2.7001 5.8105 20 1 -1.1835 3.7555 3.6285 21 1 -0.5399 -0.9353 0.0004 22 1 -0.5399 0.9353 0.0004 23 1 1.8501 -0.9353 -0.0004 24 1 3.2776 2.3319 -1.3077 25 1 3.4760 0.6816 -1.3617 26 1 4.7056 0.8257 -0.0216 27 1 5.4701 1.3941 4.1471 28 1 3.1072 1.8945 4.5295 29 1 0.8162 0.7637 5.6539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238595773.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:16 Heat of formation + Delta-G solvation = -14.274678 kcal Electronic energy + Delta-G solvation = -14729.686917 eV Core-core repulsion = 12145.972845 eV Total energy + Delta-G solvation = -2583.714073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.52316 -38.32282 -35.16752 -33.69302 -31.30996 -29.68968 -29.03009 -25.33572 -23.99140 -21.12933 -20.42421 -19.00341 -17.47968 -16.28762 -15.48267 -15.13039 -14.78971 -14.29849 -14.26255 -14.03214 -13.32858 -12.80414 -12.37927 -12.09884 -11.99046 -11.52191 -11.27233 -11.14515 -10.90795 -10.49090 -10.26997 -9.85188 -9.76000 -9.26725 -8.85020 -8.12855 -7.71557 -7.36252 -6.91144 -4.48242 2.53819 2.66814 2.99997 3.01506 3.07487 3.12192 3.82437 4.42647 5.30794 5.35078 5.66480 5.74642 5.91437 5.94651 6.03691 6.32242 6.49665 6.55469 6.87063 6.95360 7.07152 7.25249 7.37190 7.44345 7.55567 7.64900 7.75318 7.90563 7.95356 8.07778 8.41022 8.69912 8.74868 10.03177 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.012348 C = 0.008706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.870776 B = 2267.017808 C = 3215.424438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 C 0.180 3.820 4 H 0.085 0.915 5 N -0.843 5.843 6 C -0.209 4.209 7 C -0.115 4.115 8 C -0.050 4.050 9 F -0.175 7.175 10 C -0.127 4.127 11 C -0.141 4.141 12 C 0.116 3.884 13 C -0.444 4.444 14 H 0.083 0.917 15 C 0.076 3.924 16 N -0.789 5.789 17 Si 0.907 3.093 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.259 1.259 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.338 0.662 25 H 0.333 0.667 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 0.750 -3.281 3.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.129 4.129 3 C 0.069 3.931 4 H 0.103 0.897 5 N -0.371 5.371 6 C -0.212 4.212 7 C -0.134 4.134 8 C -0.070 4.070 9 F -0.155 7.155 10 C -0.146 4.146 11 C -0.161 4.161 12 C 0.113 3.887 13 C -0.473 4.473 14 H 0.101 0.899 15 C -0.142 4.142 16 N -0.413 5.413 17 Si 0.731 3.269 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.183 1.183 21 H 0.105 0.895 22 H 0.111 0.889 23 H 0.113 0.887 24 H 0.150 0.850 25 H 0.146 0.854 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.144 0.856 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.801 0.565 -3.424 3.909 hybrid contribution 0.422 0.127 1.133 1.216 sum -1.378 0.692 -2.290 2.761 Atomic orbital electron populations 1.23535 0.95827 1.00801 1.02768 1.22563 0.95503 0.97278 0.97549 1.19128 0.93460 0.95673 0.84798 0.89729 1.59164 1.33801 1.07392 1.36728 1.19964 0.93076 1.11498 0.96704 1.20035 0.93558 1.03531 0.96305 1.17269 0.77396 1.17513 0.94831 1.91281 1.34963 1.93178 1.96037 1.20484 0.96996 1.03044 0.94084 1.20991 0.90656 1.04049 1.00360 1.17454 0.93466 0.87928 0.89888 1.19537 0.94559 1.36519 0.96661 0.89944 1.25926 0.99738 0.92898 0.95683 1.69811 1.38476 1.26109 1.06923 0.86319 0.81498 0.80700 0.78424 1.19234 1.20039 1.18304 0.89487 0.88949 0.88668 0.85045 0.85378 0.88395 0.88281 0.85645 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 14.32 29.01 0.42 -2.98 15 2 C -0.11 -2.11 8.84 -36.02 -0.32 -2.43 15 3 C 0.18 3.52 2.82 -70.02 -0.20 3.32 15 4 H 0.08 1.72 6.39 -51.93 -0.33 1.39 15 5 N -0.84 -14.12 8.69 -6.65 -0.06 -14.18 15 6 C -0.21 -4.69 5.09 -104.27 -0.53 -5.22 15 7 C -0.11 -2.52 9.18 -39.92 -0.37 -2.89 15 8 C -0.05 -1.17 7.32 -39.06 -0.29 -1.46 15 9 F -0.18 -3.96 17.26 2.25 0.04 -3.92 15 10 C -0.13 -2.99 9.96 -39.92 -0.40 -3.39 15 11 C -0.14 -3.51 8.63 -39.23 -0.34 -3.85 15 12 C 0.12 2.87 5.56 -106.82 -0.59 2.27 15 13 C -0.44 -10.75 8.27 -37.79 -0.31 -11.07 15 14 H 0.08 1.92 6.48 -52.48 -0.34 1.58 15 15 C 0.08 1.79 5.16 -17.34 -0.09 1.70 15 16 N -0.79 -19.25 10.98 55.55 0.61 -18.64 15 17 Si 0.91 17.66 29.59 -169.99 -5.03 12.63 15 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 19 H -0.28 -5.29 7.11 56.52 0.40 -4.88 15 20 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 21 H 0.09 1.38 8.06 -52.49 -0.42 0.96 15 22 H 0.09 1.60 7.84 -52.49 -0.41 1.19 15 23 H 0.10 1.80 8.06 -52.49 -0.42 1.37 15 24 H 0.34 5.29 9.05 -39.29 -0.36 4.94 15 25 H 0.33 5.32 7.29 -39.29 -0.29 5.03 15 26 H 0.10 1.89 6.21 -52.49 -0.33 1.57 15 27 H 0.10 2.13 8.06 -52.49 -0.42 1.71 15 28 H 0.13 3.18 6.24 -52.49 -0.33 2.85 15 29 H 0.28 6.31 8.30 -40.82 -0.34 5.97 15 LS Contribution 254.95 15.07 3.84 3.84 Total: -1.00 -25.56 254.95 -6.39 -31.95 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -2.78 Total: 14.30 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -3.01 Total: -25.99 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.55 Total: -32.81 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.04 Total: -3.92 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -25.56 -6.39 -31.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595773.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.675 kcal (2) G-P(sol) polarization free energy of solvation -25.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds