Wall clock time and date at job start Mon Mar 30 2020 03:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00098 * 2 1 4 4 H 1.09001 * 109.46783 * 5.00241 * 3 2 1 5 5 N 1.46894 * 109.47405 * 245.00578 * 3 2 1 6 6 C 1.50697 * 109.47129 * 125.00018 * 3 2 1 7 7 C 1.36590 * 120.11128 * 100.26293 * 6 3 2 8 8 C 1.38919 * 120.21508 * 180.27862 * 7 6 3 9 9 F 1.35110 * 119.77478 * 179.71586 * 8 7 6 10 10 C 1.38963 * 120.44486 * 359.69279 * 8 7 6 11 11 C 1.36543 * 120.21945 * 0.04593 * 10 8 7 12 12 C 1.40749 * 120.11355 * 280.00288 * 6 3 2 13 13 C 1.41309 * 120.21703 * 0.02562 * 12 6 3 14 14 H 1.08003 * 120.00127 * 333.48115 * 13 12 6 15 15 C 1.39920 * 120.00250 * 153.20895 * 13 12 6 16 16 N 1.30858 * 119.99802 * 344.07217 * 15 13 12 17 17 Si 1.86799 * 120.00337 * 164.07804 * 15 13 12 18 18 H 1.48500 * 109.47269 * 89.99645 * 17 15 13 19 19 H 1.48494 * 109.47173 * 209.99827 * 17 15 13 20 20 H 1.48503 * 109.46830 * 329.99703 * 17 15 13 21 21 H 1.07996 * 119.99689 * 180.02562 * 1 2 3 22 22 H 1.07998 * 119.99695 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.00418 * 180.02562 * 2 1 3 24 24 H 1.00902 * 111.00382 * 176.04901 * 5 3 2 25 25 H 1.00909 * 110.99752 * 299.99391 * 5 3 2 26 26 H 1.07996 * 119.88827 * 359.97438 * 7 6 3 27 27 H 1.07999 * 119.88977 * 180.02562 * 10 8 7 28 28 H 1.07996 * 120.11122 * 179.97438 * 11 10 8 29 29 H 0.97001 * 119.99930 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3586 2.1316 0.0896 5 7 2.8152 1.4366 -1.2552 6 6 3.0205 1.3327 1.1638 7 6 4.3448 1.0610 0.9687 8 6 5.2278 1.0801 2.0410 9 9 6.5349 0.8044 1.8388 10 6 4.7758 1.3814 3.3200 11 6 3.4566 1.6610 3.5347 12 6 2.5536 1.6438 2.4547 13 6 1.1863 1.9312 2.6664 14 1 0.5876 2.3310 1.8613 15 6 0.6067 1.6926 3.9173 16 7 1.2182 0.9294 4.7868 17 14 -1.0399 2.4634 4.3462 18 1 -2.1359 1.5473 3.9404 19 1 -1.1092 2.7001 5.8105 20 1 -1.1835 3.7555 3.6285 21 1 -0.5399 -0.9353 0.0004 22 1 -0.5399 0.9353 0.0004 23 1 1.8501 -0.9353 -0.0004 24 1 3.2776 2.3319 -1.3077 25 1 3.4760 0.6816 -1.3617 26 1 4.7056 0.8257 -0.0216 27 1 5.4701 1.3941 4.1471 28 1 3.1072 1.8945 4.5295 29 1 0.8162 0.7637 5.6539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238595773.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:15 Heat of formation + Delta-G solvation = -28.434980 kcal Electronic energy + Delta-G solvation = -14730.300954 eV Core-core repulsion = 12145.972845 eV Total energy + Delta-G solvation = -2584.328109 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.33185 -40.04467 -36.76001 -35.47309 -32.78170 -31.47596 -30.73891 -27.10457 -25.61726 -22.92018 -22.11412 -20.54440 -19.27401 -18.05213 -17.19015 -16.63241 -16.46334 -16.08293 -15.86010 -15.65474 -14.95024 -14.50560 -14.03294 -13.77535 -13.69720 -13.17898 -12.89584 -12.77475 -12.49061 -12.19198 -11.83719 -11.54394 -11.50608 -11.02374 -10.29358 -9.62442 -9.46830 -9.19388 -8.67448 -6.32693 0.74639 0.88544 1.41693 1.47615 1.54992 1.65181 2.20160 2.64404 3.54532 3.88774 3.93582 4.15634 4.21289 4.31205 4.49623 4.70645 4.84673 5.08284 5.14586 5.17522 5.28293 5.53793 5.68638 5.84625 5.89150 5.97575 6.10752 6.20672 6.33884 6.58558 6.65387 6.88572 6.92569 8.29145 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.012348 C = 0.008706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.870776 B = 2267.017808 C = 3215.424438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.134 4.134 3 C 0.188 3.812 4 H 0.076 0.924 5 N -0.833 5.833 6 C -0.208 4.208 7 C -0.114 4.114 8 C -0.066 4.066 9 F -0.172 7.172 10 C -0.134 4.134 11 C -0.165 4.165 12 C 0.090 3.910 13 C -0.460 4.460 14 H 0.087 0.913 15 C 0.039 3.961 16 N -0.819 5.819 17 Si 0.973 3.027 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.256 1.256 21 H 0.107 0.893 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.345 0.655 25 H 0.340 0.660 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 0.819 -4.143 4.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.152 4.152 3 C 0.077 3.923 4 H 0.094 0.906 5 N -0.362 5.362 6 C -0.211 4.211 7 C -0.133 4.133 8 C -0.086 4.086 9 F -0.152 7.152 10 C -0.153 4.153 11 C -0.185 4.185 12 C 0.087 3.913 13 C -0.489 4.489 14 H 0.105 0.895 15 C -0.177 4.177 16 N -0.444 5.444 17 Si 0.794 3.206 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.179 1.179 21 H 0.125 0.875 22 H 0.114 0.886 23 H 0.113 0.887 24 H 0.158 0.842 25 H 0.154 0.846 26 H 0.143 0.857 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.769 0.631 -4.302 5.155 hybrid contribution 0.762 0.079 1.370 1.569 sum -2.007 0.710 -2.932 3.624 Atomic orbital electron populations 1.23763 0.95513 1.01953 1.00661 1.22595 0.96142 0.96954 0.99523 1.18998 0.92978 0.95725 0.84603 0.90607 1.59119 1.34082 1.08142 1.34823 1.20345 0.93872 1.09943 0.96946 1.20305 0.93208 1.02550 0.97241 1.17464 0.77840 1.18109 0.95196 1.91281 1.34673 1.93192 1.96008 1.20642 0.96901 1.02792 0.94939 1.20955 0.91395 1.05991 1.00130 1.17820 0.94055 0.88555 0.90867 1.19742 0.94599 1.37040 0.97495 0.89492 1.26717 1.03049 0.92773 0.95207 1.69868 1.40147 1.26931 1.07480 0.85311 0.77224 0.79816 0.78222 1.18570 1.19599 1.17940 0.87526 0.88608 0.88690 0.84212 0.84602 0.85697 0.87043 0.86993 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.04 14.32 67.78 0.97 -5.07 15 2 C -0.13 -4.89 8.84 25.65 0.23 -4.67 15 3 C 0.19 7.09 2.82 43.42 0.12 7.21 15 4 H 0.08 3.00 6.39 -2.39 -0.02 2.98 15 5 N -0.83 -26.11 8.69 -174.96 -1.52 -27.63 15 6 C -0.21 -9.15 5.09 -19.64 -0.10 -9.25 15 7 C -0.11 -4.86 9.18 22.05 0.20 -4.66 15 8 C -0.07 -3.05 7.32 22.61 0.17 -2.89 15 9 F -0.17 -7.60 17.26 44.97 0.78 -6.82 15 10 C -0.13 -6.35 9.96 22.05 0.22 -6.13 15 11 C -0.17 -8.36 8.63 22.50 0.19 -8.16 15 12 C 0.09 4.48 5.56 -21.29 -0.12 4.36 15 13 C -0.46 -22.19 8.27 23.43 0.19 -22.00 15 14 H 0.09 3.99 6.48 -2.91 -0.02 3.98 15 15 C 0.04 1.79 5.16 85.25 0.44 2.23 15 16 N -0.82 -40.19 10.98 21.82 0.24 -39.95 15 17 Si 0.97 35.44 29.59 68.60 2.03 37.47 15 18 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 19 H -0.27 -9.61 7.11 99.48 0.71 -8.91 15 20 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 21 H 0.11 3.10 8.06 -2.91 -0.02 3.07 15 22 H 0.10 3.11 7.84 -2.91 -0.02 3.09 15 23 H 0.10 3.45 8.06 -2.91 -0.02 3.43 15 24 H 0.34 10.05 9.05 -89.69 -0.81 9.23 15 25 H 0.34 10.01 7.29 -89.69 -0.65 9.36 15 26 H 0.13 4.55 6.21 -2.91 -0.02 4.53 15 27 H 0.11 4.84 8.06 -2.91 -0.02 4.81 15 28 H 0.11 5.87 6.24 -2.91 -0.02 5.85 15 29 H 0.29 12.93 8.30 -92.71 -0.77 12.16 15 Total: -1.00 -53.03 254.95 3.76 -49.26 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.28 Total: 36.69 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 2.52 Total: -49.02 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -1.28 Total: -67.58 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.78 Total: -6.82 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Total: -53.03 3.76 -49.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595773.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.826 kcal (2) G-P(sol) polarization free energy of solvation -53.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds