Wall clock time and date at job start Mon Mar 30 2020 03:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00179 * 2 1 4 4 H 1.48501 * 109.46773 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46994 * 119.99892 * 3 2 1 6 6 H 1.48493 * 109.47324 * 240.00199 * 3 2 1 7 7 C 1.37887 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99762 * 14.84587 * 7 2 1 9 9 C 1.50697 * 120.00220 * 194.84525 * 7 2 1 10 10 H 1.09001 * 109.46901 * 305.59020 * 9 7 2 11 11 N 1.46906 * 109.46953 * 65.58730 * 9 7 2 12 12 C 1.50694 * 109.47242 * 185.58771 * 9 7 2 13 13 C 1.38468 * 120.22952 * 279.72164 * 12 9 7 14 14 N 1.31827 * 121.29050 * 179.74607 * 13 12 9 15 15 C 1.32428 * 121.80630 * 0.54295 * 14 13 12 16 16 N 1.38102 * 119.85748 * 179.74976 * 15 14 13 17 17 C 1.40835 * 120.29422 * 359.72818 * 15 14 13 18 18 C 1.46640 * 120.63705 * 180.02562 * 17 15 14 19 19 O 1.21325 * 119.99489 * 179.97438 * 18 17 15 20 20 C 1.38211 * 120.22366 * 99.99924 * 12 9 7 21 21 H 0.97005 * 120.00119 * 174.89282 * 1 2 3 22 22 H 1.00902 * 111.00040 * 299.27060 * 11 9 7 23 23 H 1.00897 * 110.99989 * 63.22680 * 11 9 7 24 24 H 1.08002 * 119.34849 * 0.02562 * 13 12 9 25 25 H 0.96993 * 120.00284 * 179.97438 * 16 15 14 26 26 H 0.96999 * 119.99729 * 359.97438 * 16 15 14 27 27 H 1.07992 * 120.00792 * 359.97438 * 18 17 15 28 28 H 1.07997 * 120.83522 * 0.02562 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6963 1.2126 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4916 -2.1139 -0.2387 9 6 3.4738 -1.2158 0.3349 10 1 4.0048 -0.5211 -0.3160 11 7 3.6630 -0.8161 1.7358 12 6 4.0147 -2.6076 0.1321 13 6 3.8229 -3.5781 1.1010 14 7 4.2826 -4.8035 0.9431 15 6 4.9562 -5.1622 -0.1392 16 7 5.4241 -6.4558 -0.2605 17 6 5.1971 -4.2303 -1.1674 18 6 5.9416 -4.6196 -2.3693 19 8 6.1421 -3.8075 -3.2481 20 6 4.7105 -2.9226 -1.0197 21 1 -0.4850 -0.8367 -0.0748 22 1 3.3189 0.1190 1.8948 23 1 3.2241 -1.4743 2.3621 24 1 3.2821 -3.3273 2.0016 25 1 5.9174 -6.7209 -1.0524 26 1 5.2595 -7.0994 0.4464 27 1 6.3114 -5.6290 -2.4722 28 1 4.8764 -2.1806 -1.7867 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238597639.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:51 Heat of formation + Delta-G solvation = 1.280557 kcal Electronic energy + Delta-G solvation = -14485.931044 eV Core-core repulsion = 11922.811458 eV Total energy + Delta-G solvation = -2563.119585 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.18250 -38.30955 -35.93337 -33.91876 -32.15222 -31.66986 -28.84494 -25.83410 -25.12463 -22.75407 -21.74126 -19.66742 -18.07354 -17.67399 -17.29745 -15.75184 -15.35703 -15.07417 -14.50446 -14.39083 -13.92632 -13.39970 -13.29402 -12.87622 -12.57601 -12.31595 -11.69891 -11.21436 -10.66598 -10.37633 -10.12862 -9.76911 -9.39162 -9.35507 -9.00603 -8.54450 -7.77612 -7.44303 -6.51829 -4.29705 0.91295 1.94759 2.69405 3.25805 3.35751 3.50825 3.52838 4.28910 4.32175 4.32633 4.93355 5.10574 5.13903 5.50229 5.58394 5.75606 5.93340 6.11496 6.37636 6.57348 6.90063 7.14954 7.33619 7.43255 7.56717 7.73168 8.13979 8.29726 8.40069 8.45710 8.76396 9.43618 10.76696 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035691 B = 0.008344 C = 0.007557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.322105 B = 3354.969462 C = 3704.165151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.031 3.969 3 Si 1.048 2.952 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.281 1.281 7 C -0.628 4.628 8 H 0.056 0.944 9 C 0.221 3.779 10 H 0.045 0.955 11 N -0.857 5.857 12 C -0.136 4.136 13 C 0.192 3.808 14 N -0.555 5.555 15 C 0.425 3.575 16 N -0.849 5.849 17 C -0.315 4.315 18 C 0.391 3.609 19 O -0.471 6.471 20 C 0.019 3.981 21 H 0.269 0.731 22 H 0.333 0.667 23 H 0.323 0.677 24 H 0.157 0.843 25 H 0.404 0.596 26 H 0.404 0.596 27 H 0.087 0.913 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.202 -9.544 0.426 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.176 4.176 3 Si 0.876 3.124 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.207 1.207 7 C -0.668 4.668 8 H 0.074 0.926 9 C 0.111 3.889 10 H 0.063 0.937 11 N -0.389 5.389 12 C -0.140 4.140 13 C 0.034 3.966 14 N -0.272 5.272 15 C 0.187 3.813 16 N -0.393 5.393 17 C -0.324 4.324 18 C 0.251 3.749 19 O -0.345 6.345 20 C -0.007 4.007 21 H 0.079 0.921 22 H 0.149 0.851 23 H 0.135 0.865 24 H 0.174 0.826 25 H 0.234 0.766 26 H 0.234 0.766 27 H 0.103 0.897 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.730 -8.123 0.502 13.467 hybrid contribution -0.823 -1.556 -0.710 1.898 sum 9.907 -9.679 -0.209 13.852 Atomic orbital electron populations 1.70847 1.06871 1.30997 1.44345 1.25873 0.96282 1.02538 0.92860 0.83951 0.75232 0.75677 0.77534 1.20943 1.19835 1.20672 1.22651 0.93853 0.96211 1.54091 0.92565 1.18152 0.95036 0.87889 0.87831 0.93713 1.59858 1.65396 1.07170 1.06469 1.20797 0.99384 0.99277 0.94572 1.22451 0.90748 0.85797 0.97570 1.67209 1.16329 1.20802 1.22891 1.18319 0.88681 0.85373 0.88952 1.42009 1.62843 1.09057 1.25433 1.20933 1.14729 0.96535 1.00153 1.23343 0.75725 0.92138 0.83696 1.90531 1.48721 1.54906 1.40389 1.21510 0.89258 0.94070 0.95910 0.92062 0.85141 0.86530 0.82569 0.76586 0.76641 0.89671 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.69 55.43 0.76 -25.80 15 2 C 0.03 0.86 5.41 -17.82 -0.10 0.76 15 3 Si 1.05 23.99 26.42 -169.99 -4.49 19.50 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.27 -5.62 5.62 56.52 0.32 -5.30 15 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.63 -16.80 9.04 -34.44 -0.31 -17.11 15 8 H 0.06 1.66 7.99 -52.49 -0.42 1.24 15 9 C 0.22 5.06 2.50 -70.02 -0.17 4.88 15 10 H 0.05 1.05 6.73 -51.93 -0.35 0.70 15 11 N -0.86 -17.94 9.09 -6.65 -0.06 -18.00 15 12 C -0.14 -2.81 4.90 -104.55 -0.51 -3.32 15 13 C 0.19 3.66 10.43 -17.47 -0.18 3.48 15 14 N -0.55 -9.71 10.37 -12.14 -0.13 -9.84 15 15 C 0.43 6.51 7.77 -155.22 -1.21 5.30 15 16 N -0.85 -8.59 8.97 31.30 0.28 -8.30 15 17 C -0.32 -5.16 5.90 -104.75 -0.62 -5.78 15 18 C 0.39 5.45 11.11 34.12 0.38 5.83 15 19 O -0.47 -8.32 17.23 5.52 0.10 -8.22 15 20 C 0.02 0.36 9.34 -38.81 -0.36 0.00 15 21 H 0.27 8.00 8.73 -40.82 -0.36 7.65 15 22 H 0.33 7.11 5.47 -39.29 -0.22 6.89 15 23 H 0.32 6.35 7.22 -39.29 -0.28 6.07 15 24 H 0.16 2.81 6.58 -52.49 -0.35 2.47 15 25 H 0.40 2.83 6.81 -40.82 -0.28 2.55 15 26 H 0.40 3.52 8.95 -40.82 -0.37 3.16 15 27 H 0.09 0.76 6.44 -52.49 -0.34 0.42 15 28 H 0.14 2.68 7.73 -52.49 -0.41 2.28 15 LS Contribution 244.68 15.07 3.69 3.69 Total: -1.00 -31.71 244.68 -5.18 -36.89 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -2.24 Total: 16.06 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -3.08 Total: -5.96 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.85 Total: -61.94 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.10 Total: -8.22 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -4.49 Total: 19.50 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.71 -5.18 -36.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597639.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.166 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds