Wall clock time and date at job start Mon Mar 30 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00179 * 2 1 4 4 H 1.48501 * 109.46773 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46994 * 119.99892 * 3 2 1 6 6 H 1.48493 * 109.47324 * 240.00199 * 3 2 1 7 7 C 1.37887 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99762 * 14.84587 * 7 2 1 9 9 C 1.50697 * 120.00220 * 194.84525 * 7 2 1 10 10 H 1.09001 * 109.46901 * 305.59020 * 9 7 2 11 11 N 1.46906 * 109.46953 * 65.58730 * 9 7 2 12 12 C 1.50694 * 109.47242 * 185.58771 * 9 7 2 13 13 C 1.38468 * 120.22952 * 279.72164 * 12 9 7 14 14 N 1.31827 * 121.29050 * 179.74607 * 13 12 9 15 15 C 1.32428 * 121.80630 * 0.54295 * 14 13 12 16 16 N 1.38102 * 119.85748 * 179.74976 * 15 14 13 17 17 C 1.40835 * 120.29422 * 359.72818 * 15 14 13 18 18 C 1.46640 * 120.63705 * 180.02562 * 17 15 14 19 19 O 1.21325 * 119.99489 * 179.97438 * 18 17 15 20 20 C 1.38211 * 120.22366 * 99.99924 * 12 9 7 21 21 H 0.97005 * 120.00119 * 174.89282 * 1 2 3 22 22 H 1.00902 * 111.00040 * 299.27060 * 11 9 7 23 23 H 1.00897 * 110.99989 * 63.22680 * 11 9 7 24 24 H 1.08002 * 119.34849 * 0.02562 * 13 12 9 25 25 H 0.96993 * 120.00284 * 179.97438 * 16 15 14 26 26 H 0.96999 * 119.99729 * 359.97438 * 16 15 14 27 27 H 1.07992 * 120.00792 * 359.97438 * 18 17 15 28 28 H 1.07997 * 120.83522 * 0.02562 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6963 1.2126 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4916 -2.1139 -0.2387 9 6 3.4738 -1.2158 0.3349 10 1 4.0048 -0.5211 -0.3160 11 7 3.6630 -0.8161 1.7358 12 6 4.0147 -2.6076 0.1321 13 6 3.8229 -3.5781 1.1010 14 7 4.2826 -4.8035 0.9431 15 6 4.9562 -5.1622 -0.1392 16 7 5.4241 -6.4558 -0.2605 17 6 5.1971 -4.2303 -1.1674 18 6 5.9416 -4.6196 -2.3693 19 8 6.1421 -3.8075 -3.2481 20 6 4.7105 -2.9226 -1.0197 21 1 -0.4850 -0.8367 -0.0748 22 1 3.3189 0.1190 1.8948 23 1 3.2241 -1.4743 2.3621 24 1 3.2821 -3.3273 2.0016 25 1 5.9174 -6.7209 -1.0524 26 1 5.2595 -7.0994 0.4464 27 1 6.3114 -5.6290 -2.4722 28 1 4.8764 -2.1806 -1.7867 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238597639.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:50 Heat of formation + Delta-G solvation = -25.021770 kcal Electronic energy + Delta-G solvation = -14487.071598 eV Core-core repulsion = 11922.811458 eV Total energy + Delta-G solvation = -2564.260140 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.50913 -39.58023 -37.48823 -35.38623 -33.88455 -33.28256 -30.23050 -27.71055 -26.48885 -24.31513 -23.17629 -21.18850 -19.85966 -19.12441 -18.52477 -17.25105 -16.73262 -16.23385 -15.90140 -15.79659 -15.53673 -14.98849 -14.83787 -14.53451 -14.23987 -14.03913 -13.44124 -12.86631 -12.34933 -11.95598 -11.69488 -11.39383 -11.04499 -10.78247 -10.64413 -10.36534 -9.51830 -8.98528 -8.51786 -6.49765 -0.40328 0.53485 1.43045 1.48720 1.51508 1.70214 2.40608 2.48066 2.93308 3.00862 3.22657 3.60605 3.81432 4.07776 4.20785 4.38780 4.47005 4.54739 4.94641 4.97512 5.48380 5.57151 5.75945 5.92872 6.24992 6.36740 6.42693 6.46820 6.54447 6.81513 7.22516 7.31968 8.55300 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035691 B = 0.008344 C = 0.007557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.322105 B = 3354.969462 C = 3704.165151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.017 4.017 3 Si 1.087 2.913 4 H -0.289 1.289 5 H -0.235 1.235 6 H -0.272 1.272 7 C -0.624 4.624 8 H 0.014 0.986 9 C 0.228 3.772 10 H 0.039 0.961 11 N -0.844 5.844 12 C -0.170 4.170 13 C 0.190 3.810 14 N -0.563 5.563 15 C 0.435 3.565 16 N -0.818 5.818 17 C -0.323 4.323 18 C 0.401 3.599 19 O -0.510 6.510 20 C 0.004 3.996 21 H 0.252 0.748 22 H 0.332 0.668 23 H 0.331 0.669 24 H 0.159 0.841 25 H 0.423 0.577 26 H 0.416 0.584 27 H 0.154 0.846 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.536 -11.053 0.587 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.216 4.216 3 Si 0.908 3.092 4 H -0.215 1.215 5 H -0.159 1.159 6 H -0.197 1.197 7 C -0.663 4.663 8 H 0.033 0.967 9 C 0.117 3.883 10 H 0.057 0.943 11 N -0.375 5.375 12 C -0.175 4.175 13 C 0.032 3.968 14 N -0.281 5.281 15 C 0.194 3.806 16 N -0.364 5.364 17 C -0.331 4.331 18 C 0.263 3.737 19 O -0.386 6.386 20 C -0.022 4.022 21 H 0.061 0.939 22 H 0.147 0.853 23 H 0.143 0.857 24 H 0.176 0.824 25 H 0.257 0.743 26 H 0.248 0.752 27 H 0.170 0.830 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.105 -9.723 0.669 16.331 hybrid contribution -1.511 -1.318 -0.788 2.154 sum 11.593 -11.041 -0.119 16.010 Atomic orbital electron populations 1.70981 1.08165 1.29978 1.47456 1.27251 0.96158 1.06215 0.91993 0.83489 0.74654 0.71532 0.79517 1.21492 1.15892 1.19694 1.22819 0.96207 0.94407 1.52881 0.96718 1.17944 0.92211 0.89669 0.88455 0.94296 1.59787 1.65036 1.07248 1.05468 1.20617 1.02051 0.98585 0.96269 1.22435 0.90811 0.86228 0.97323 1.67268 1.17104 1.19843 1.23918 1.18500 0.87403 0.86897 0.87791 1.41962 1.61028 1.06979 1.26450 1.21258 1.14650 0.95465 1.01726 1.24067 0.74049 0.93997 0.81597 1.90538 1.50036 1.56627 1.41388 1.21571 0.89761 0.95645 0.95223 0.93860 0.85301 0.85678 0.82409 0.74320 0.75208 0.82975 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.69 21.45 0.29 -56.68 15 2 C -0.02 -0.93 5.41 84.66 0.46 -0.48 15 3 Si 1.09 48.27 26.42 68.60 1.81 50.08 15 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 15 5 H -0.23 -8.96 5.62 99.48 0.56 -8.40 15 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 7 C -0.62 -34.39 9.04 25.60 0.23 -34.16 15 8 H 0.01 0.90 7.99 -2.91 -0.02 0.88 15 9 C 0.23 10.51 2.50 43.42 0.11 10.62 15 10 H 0.04 1.84 6.73 -2.39 -0.02 1.82 15 11 N -0.84 -34.69 9.09 -174.95 -1.59 -36.28 15 12 C -0.17 -7.08 4.90 -19.82 -0.10 -7.18 15 13 C 0.19 7.18 10.43 84.75 0.88 8.07 15 14 N -0.56 -18.70 10.37 -192.32 -2.00 -20.69 15 15 C 0.43 12.02 7.77 133.78 1.04 13.06 15 16 N -0.82 -12.74 8.97 -54.89 -0.49 -13.23 15 17 C -0.32 -9.88 5.90 -19.94 -0.12 -10.00 15 18 C 0.40 9.83 11.11 70.02 0.78 10.61 15 19 O -0.51 -17.04 17.23 -3.17 -0.05 -17.10 15 20 C 0.00 0.17 9.34 22.77 0.21 0.38 15 21 H 0.25 15.80 8.73 -92.70 -0.81 14.99 15 22 H 0.33 13.66 5.47 -89.69 -0.49 13.16 15 23 H 0.33 12.85 7.22 -89.70 -0.65 12.21 15 24 H 0.16 5.69 6.58 -2.91 -0.02 5.68 15 25 H 0.42 3.47 6.81 -92.71 -0.63 2.84 15 26 H 0.42 5.31 8.95 -92.71 -0.83 4.48 15 27 H 0.15 1.76 6.44 -2.91 -0.02 1.74 15 28 H 0.13 5.03 7.73 -2.91 -0.02 5.01 15 Total: -1.00 -71.74 244.68 -0.07 -71.81 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -1.54 Total: 31.17 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 3.50 Total: -9.08 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -3.79 Total: -126.88 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.05 Total: -17.10 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.81 Total: 50.08 kcal Total: -71.74 -0.07 -71.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597639.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.787 kcal (2) G-P(sol) polarization free energy of solvation -71.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds