Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47141 * 269.99805 * 3 2 1 5 5 H 1.48504 * 109.46854 * 29.99994 * 3 2 1 6 6 H 1.48497 * 109.47258 * 149.99583 * 3 2 1 7 7 C 1.40048 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00313 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99765 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00062 * 179.97438 * 9 7 2 12 12 N 1.40105 * 119.99867 * 179.97438 * 11 9 7 13 13 C 1.39998 * 119.99846 * 180.02562 * 12 11 9 14 14 C 1.38865 * 119.99714 * 179.97438 * 13 12 11 15 15 C 1.38095 * 119.99655 * 180.02562 * 14 13 12 16 16 C 1.38860 * 120.00049 * 0.02562 * 15 14 13 17 17 N 1.40002 * 119.99648 * 179.97438 * 16 15 14 18 18 C 1.38859 * 120.00159 * 0.23077 * 16 15 14 19 19 C 1.38092 * 119.99558 * 359.49139 * 18 16 15 20 20 H 0.96996 * 120.00019 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00543 * 359.97438 * 11 9 7 22 22 H 0.97004 * 120.00097 * 359.97438 * 12 11 9 23 23 H 1.07990 * 120.00103 * 0.02562 * 14 13 12 24 24 H 1.08002 * 119.99543 * 180.02562 * 15 14 13 25 25 H 0.97001 * 120.00450 * 0.02562 * 17 16 15 26 26 H 0.97005 * 119.99826 * 179.72430 * 17 16 15 27 27 H 1.07999 * 119.99964 * 179.74267 * 18 16 15 28 28 H 1.08002 * 119.99453 * 180.22801 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4402 0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 7 1.2485 -4.8610 0.0011 13 6 1.9485 -6.0735 0.0016 14 6 1.2541 -7.2760 0.0027 15 6 1.9446 -8.4720 0.0038 16 6 3.3332 -8.4719 0.0043 17 7 4.0332 -9.6844 0.0059 18 6 4.0275 -7.2694 0.0086 19 6 3.3370 -6.0735 0.0017 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6478 0.0002 22 1 0.2784 -4.8611 0.0018 23 1 0.1742 -7.2760 0.0027 24 1 1.4046 -9.4073 0.0042 25 1 3.5482 -10.5245 0.0063 26 1 5.0033 -9.6844 0.0023 27 1 5.1075 -7.2694 0.0132 28 1 3.8771 -5.1382 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238605317.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = 23.776039 kcal Electronic energy + Delta-G solvation = -13984.231063 eV Core-core repulsion = 11422.086955 eV Total energy + Delta-G solvation = -2562.144108 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.17421 -37.43344 -35.23881 -33.15343 -32.42908 -30.65564 -29.85505 -26.86164 -25.45910 -22.72323 -21.24371 -20.09479 -18.10829 -16.89462 -16.51835 -16.05962 -15.73352 -15.10886 -14.13052 -13.51134 -13.46623 -13.31688 -12.99386 -12.65655 -12.48290 -12.06090 -11.36349 -11.31567 -11.01104 -10.65777 -10.58434 -10.32933 -9.53099 -8.92340 -8.62977 -7.86023 -7.64323 -6.32489 -5.99926 -4.76014 1.73376 2.17091 3.09515 3.12539 3.18545 3.32691 4.08962 4.14816 4.28145 4.49194 5.18349 5.24187 5.51941 5.68371 5.68892 5.91257 6.09213 6.33902 6.58297 6.71199 6.85211 7.07630 7.32394 7.45698 7.77660 7.99104 8.03864 8.33692 8.81624 8.90361 9.33157 10.46974 10.63424 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.067421 B = 0.005394 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.203108 B = 5189.749233 C = 5595.109566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.565 5.565 12 N -0.542 5.542 13 C 0.189 3.811 14 C -0.163 4.163 15 C -0.137 4.137 16 C 0.135 3.865 17 N -0.892 5.892 18 C -0.137 4.137 19 C -0.165 4.165 20 H 0.271 0.729 21 H 0.401 0.599 22 H 0.424 0.576 23 H 0.119 0.881 24 H 0.114 0.886 25 H 0.390 0.610 26 H 0.390 0.610 27 H 0.114 0.886 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.518 -12.755 0.002 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.360 3.640 10 O -0.463 6.463 11 N -0.316 5.316 12 N -0.263 5.263 13 C 0.081 3.919 14 C -0.189 4.189 15 C -0.161 4.161 16 C 0.032 3.968 17 N -0.435 5.435 18 C -0.160 4.160 19 C -0.190 4.190 20 H 0.082 0.918 21 H 0.239 0.761 22 H 0.266 0.734 23 H 0.137 0.863 24 H 0.132 0.868 25 H 0.217 0.783 26 H 0.217 0.783 27 H 0.132 0.868 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.456 -12.323 0.010 13.911 hybrid contribution 0.730 0.430 -0.013 0.848 sum 7.186 -11.892 -0.002 13.895 Atomic orbital electron populations 1.70016 1.07129 1.27664 1.34469 1.25710 0.94727 1.00395 0.92510 0.86239 0.80054 0.80778 0.78946 1.19600 1.20337 1.18744 1.20674 0.93740 0.88185 1.54815 0.90899 1.18527 0.87607 0.80877 0.76973 1.90609 1.13878 1.86036 1.55742 1.45649 1.06744 0.95611 1.83556 1.43386 1.06449 0.95095 1.81372 1.17708 0.91511 0.84782 0.97876 1.20162 0.99182 0.90278 1.09234 1.20186 0.91893 0.97238 1.06737 1.17477 0.91165 0.86259 1.01859 1.42231 1.08070 1.04709 1.88505 1.20244 0.98648 0.90703 1.06410 1.20229 0.92129 0.97791 1.08813 0.91824 0.76068 0.73430 0.86315 0.86754 0.78288 0.78259 0.86794 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.50 11.83 55.55 0.66 -21.84 15 2 C 0.09 2.38 5.50 -17.37 -0.10 2.28 15 3 Si 0.92 19.65 29.56 -169.99 -5.02 14.63 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.54 -14.79 9.54 -35.63 -0.34 -15.13 15 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 15 9 C 0.56 15.71 7.86 -12.99 -0.10 15.60 15 10 O -0.58 -18.56 14.86 5.20 0.08 -18.49 15 11 N -0.57 -13.07 6.21 30.19 0.19 -12.89 15 12 N -0.54 -11.32 6.46 32.46 0.21 -11.11 15 13 C 0.19 3.35 6.72 -83.67 -0.56 2.79 15 14 C -0.16 -2.53 9.89 -39.40 -0.39 -2.92 15 15 C -0.14 -1.86 9.89 -39.40 -0.39 -2.25 15 16 C 0.13 1.77 6.76 -83.67 -0.57 1.21 15 17 N -0.89 -8.52 9.10 32.46 0.30 -8.22 15 18 C -0.14 -1.92 9.89 -39.41 -0.39 -2.31 15 19 C -0.16 -2.69 9.48 -39.41 -0.37 -3.06 15 20 H 0.27 7.20 8.29 -40.82 -0.34 6.87 15 21 H 0.40 8.16 6.58 -182.59 -1.20 6.96 15 22 H 0.42 9.12 8.01 -182.59 -1.46 7.66 15 23 H 0.12 1.67 8.06 -52.49 -0.42 1.25 15 24 H 0.11 1.27 8.06 -52.49 -0.42 0.84 15 25 H 0.39 3.00 8.84 -40.82 -0.36 2.64 15 26 H 0.39 3.05 8.84 -40.82 -0.36 2.69 15 27 H 0.11 1.34 8.06 -52.49 -0.42 0.91 15 28 H 0.12 1.84 6.20 -52.49 -0.33 1.52 15 LS Contribution 253.67 15.07 3.82 3.82 Total: -1.00 -33.41 253.67 -7.51 -40.92 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -4.53 Total: 16.96 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.21 Total: -3.78 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 1.35 Total: -54.07 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.08 Total: -18.49 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.41 -7.51 -40.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238605317.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.698 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds