Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47141 * 269.99805 * 3 2 1 5 5 H 1.48504 * 109.46854 * 29.99994 * 3 2 1 6 6 H 1.48497 * 109.47258 * 149.99583 * 3 2 1 7 7 C 1.40048 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00313 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99765 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00062 * 179.97438 * 9 7 2 12 12 N 1.40105 * 119.99867 * 179.97438 * 11 9 7 13 13 C 1.39998 * 119.99846 * 180.02562 * 12 11 9 14 14 C 1.38865 * 119.99714 * 179.97438 * 13 12 11 15 15 C 1.38095 * 119.99655 * 180.02562 * 14 13 12 16 16 C 1.38860 * 120.00049 * 0.02562 * 15 14 13 17 17 N 1.40002 * 119.99648 * 179.97438 * 16 15 14 18 18 C 1.38859 * 120.00159 * 0.23077 * 16 15 14 19 19 C 1.38092 * 119.99558 * 359.49139 * 18 16 15 20 20 H 0.96996 * 120.00019 * 0.02562 * 1 2 3 21 21 H 0.96999 * 120.00543 * 359.97438 * 11 9 7 22 22 H 0.97004 * 120.00097 * 359.97438 * 12 11 9 23 23 H 1.07990 * 120.00103 * 0.02562 * 14 13 12 24 24 H 1.08002 * 119.99543 * 180.02562 * 15 14 13 25 25 H 0.97001 * 120.00450 * 0.02562 * 17 16 15 26 26 H 0.97005 * 119.99826 * 179.72430 * 17 16 15 27 27 H 1.07999 * 119.99964 * 179.74267 * 18 16 15 28 28 H 1.08002 * 119.99453 * 180.22801 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4402 0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 7 1.2485 -4.8610 0.0011 13 6 1.9485 -6.0735 0.0016 14 6 1.2541 -7.2760 0.0027 15 6 1.9446 -8.4720 0.0038 16 6 3.3332 -8.4719 0.0043 17 7 4.0332 -9.6844 0.0059 18 6 4.0275 -7.2694 0.0086 19 6 3.3370 -6.0735 0.0017 20 1 -0.4850 0.8400 -0.0004 21 1 2.9190 -3.6478 0.0002 22 1 0.2784 -4.8611 0.0018 23 1 0.1742 -7.2760 0.0027 24 1 1.4046 -9.4073 0.0042 25 1 3.5482 -10.5245 0.0063 26 1 5.0033 -9.6844 0.0023 27 1 5.1075 -7.2694 0.0132 28 1 3.8771 -5.1382 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238605317.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = -2.078193 kcal Electronic energy + Delta-G solvation = -13985.352186 eV Core-core repulsion = 11422.086955 eV Total energy + Delta-G solvation = -2563.265232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47431 -39.28322 -36.76871 -34.78454 -34.28306 -31.90824 -31.37632 -28.58025 -27.05413 -24.00479 -22.57326 -21.87712 -19.83613 -18.30755 -17.99581 -17.47322 -17.16221 -16.73242 -15.78466 -15.17488 -14.78962 -14.76152 -14.30498 -14.16753 -14.09749 -13.37364 -13.06919 -12.90982 -12.69970 -12.60046 -12.02653 -11.77382 -11.03483 -10.84822 -10.05938 -9.79398 -9.09929 -8.36347 -7.45248 -6.85750 0.56811 0.95877 1.40016 1.43552 1.56950 1.69550 2.29617 2.41766 3.11449 3.26142 3.56828 3.91403 4.06703 4.20934 4.55728 4.75870 4.88085 5.19713 5.27992 5.37523 5.52209 5.58795 5.67023 5.92893 6.05929 6.60800 6.79085 6.85340 7.09338 7.25593 7.45383 8.43613 8.60802 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.067421 B = 0.005394 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.203108 B = 5189.749233 C = 5595.109566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.029 3.971 3 Si 1.006 2.994 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.562 4.562 8 H 0.095 0.905 9 C 0.539 3.461 10 O -0.631 6.631 11 N -0.554 5.554 12 N -0.559 5.559 13 C 0.152 3.848 14 C -0.162 4.162 15 C -0.143 4.143 16 C 0.150 3.850 17 N -0.876 5.876 18 C -0.146 4.146 19 C -0.173 4.173 20 H 0.277 0.723 21 H 0.413 0.587 22 H 0.416 0.584 23 H 0.126 0.874 24 H 0.144 0.856 25 H 0.403 0.597 26 H 0.403 0.597 27 H 0.139 0.861 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.833 -13.931 0.011 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.187 4.187 3 Si 0.824 3.176 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.600 4.600 8 H 0.113 0.887 9 C 0.343 3.657 10 O -0.517 6.517 11 N -0.303 5.303 12 N -0.284 5.284 13 C 0.048 3.952 14 C -0.187 4.187 15 C -0.166 4.166 16 C 0.045 3.955 17 N -0.419 5.419 18 C -0.169 4.169 19 C -0.197 4.197 20 H 0.087 0.913 21 H 0.253 0.747 22 H 0.255 0.745 23 H 0.144 0.856 24 H 0.162 0.838 25 H 0.232 0.768 26 H 0.232 0.768 27 H 0.157 0.843 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.875 -13.632 0.019 16.266 hybrid contribution 0.094 0.489 -0.017 0.498 sum 8.969 -13.143 0.002 15.912 Atomic orbital electron populations 1.70181 1.09612 1.29308 1.35731 1.27027 0.95619 1.04982 0.91051 0.84896 0.78711 0.74438 0.79508 1.18510 1.19754 1.16958 1.21248 0.95005 0.88710 1.55050 0.88683 1.18879 0.87256 0.82602 0.76926 1.90554 1.15862 1.87170 1.58101 1.45093 1.07139 0.96080 1.82035 1.43393 1.05986 0.94845 1.84149 1.18017 0.92269 0.84165 1.00745 1.20404 0.99860 0.90223 1.08193 1.20502 0.92370 0.97573 1.06137 1.17660 0.91325 0.87275 0.99195 1.42221 1.08867 1.04022 1.86838 1.20496 0.99976 0.90146 1.06253 1.20391 0.91717 0.98842 1.08727 0.91288 0.74654 0.74499 0.85608 0.83818 0.76764 0.76847 0.84279 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.72 11.83 21.84 0.26 -49.46 15 2 C 0.03 1.59 5.50 85.30 0.47 2.06 15 3 Si 1.01 40.13 29.56 68.60 2.03 42.15 15 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 5 H -0.27 -10.52 7.11 99.48 0.71 -9.82 15 6 H -0.25 -9.06 7.11 99.48 0.71 -8.36 15 7 C -0.56 -31.55 9.54 24.83 0.24 -31.32 15 8 H 0.10 4.70 7.85 -2.91 -0.02 4.68 15 9 C 0.54 31.67 7.86 86.36 0.68 32.35 15 10 O -0.63 -42.40 14.86 -4.31 -0.06 -42.46 15 11 N -0.55 -26.57 6.21 -176.63 -1.10 -27.66 15 12 N -0.56 -24.34 6.46 -51.23 -0.33 -24.67 15 13 C 0.15 5.42 6.72 38.13 0.26 5.68 15 14 C -0.16 -4.89 9.89 22.39 0.22 -4.67 15 15 C -0.14 -3.48 9.89 22.38 0.22 -3.26 15 16 C 0.15 3.46 6.76 38.13 0.26 3.72 15 17 N -0.88 -13.07 9.10 -51.23 -0.47 -13.53 15 18 C -0.15 -3.73 9.89 22.38 0.22 -3.51 15 19 C -0.17 -5.51 9.48 22.38 0.21 -5.30 15 20 H 0.28 15.16 8.29 -92.71 -0.77 14.39 15 21 H 0.41 17.22 6.58 -213.32 -1.40 15.82 15 22 H 0.42 19.00 8.01 -213.31 -1.71 17.29 15 23 H 0.13 3.51 8.06 -2.92 -0.02 3.49 15 24 H 0.14 2.64 8.06 -2.91 -0.02 2.61 15 25 H 0.40 4.40 8.84 -92.71 -0.82 3.58 15 26 H 0.40 4.55 8.84 -92.70 -0.82 3.73 15 27 H 0.14 2.80 8.06 -2.91 -0.02 2.77 15 28 H 0.11 3.59 6.20 -2.91 -0.02 3.57 15 Total: -1.00 -74.89 253.67 -0.41 -75.30 By element: Atomic # 1 Polarization: 48.09 SS G_CDS: -3.51 Total: 44.58 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 2.78 Total: -4.25 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -1.64 Total: -115.32 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.06 Total: -42.46 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Total: -74.89 -0.41 -75.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238605317.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.224 kcal (2) G-P(sol) polarization free energy of solvation -74.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds