Wall clock time and date at job start Mon Mar 30 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27945 * 1 3 3 Si 1.86795 * 120.00008 * 2 1 4 4 H 1.48503 * 109.47441 * 239.99916 * 3 2 1 5 5 H 1.48504 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47341 * 119.99890 * 3 2 1 7 7 C 1.50699 * 119.99809 * 180.02562 * 2 1 3 8 8 C 1.55182 * 110.65238 * 339.92648 * 7 2 1 9 9 C 1.54327 * 102.15390 * 149.79748 * 8 7 2 10 10 H 1.09003 * 109.42109 * 80.03182 * 9 8 7 11 11 C 1.50703 * 111.32745 * 202.68911 * 9 8 7 12 12 N 1.34781 * 119.99734 * 276.54491 * 11 9 8 13 13 O 1.21281 * 119.99773 * 96.53899 * 11 9 8 14 14 N 1.46369 * 103.97861 * 321.82506 * 9 8 7 15 15 N 1.40233 * 129.33995 * 214.39608 * 14 9 8 16 16 C 1.31204 * 115.39534 * 143.23038 * 15 14 9 17 17 C 1.46612 * 120.07750 * 358.76348 * 16 15 14 18 18 C 1.33467 * 122.05727 * 17.59001 * 17 16 15 19 19 C 1.47823 * 108.47574 * 30.98144 * 14 9 8 20 20 H 1.08991 * 110.51192 * 109.38460 * 19 14 9 21 21 H 0.96999 * 119.99856 * 359.97438 * 1 2 3 22 22 H 1.09002 * 110.47247 * 217.18471 * 7 2 1 23 23 H 1.09002 * 110.96310 * 268.51673 * 8 7 2 24 24 H 1.09004 * 110.96432 * 32.21623 * 8 7 2 25 25 H 0.96992 * 120.00042 * 0.02562 * 12 11 9 26 26 H 0.96999 * 119.99671 * 179.97438 * 12 11 9 27 27 H 1.07998 * 119.95336 * 178.73866 * 16 15 14 28 28 H 1.08011 * 118.97144 * 197.61534 * 17 16 15 29 29 H 1.08005 * 120.69660 * 179.73198 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 3.0672 1.6964 -1.2125 5 1 1.2484 2.7465 -0.0006 6 1 3.0671 1.6964 1.2125 7 6 2.0329 -1.3051 -0.0006 8 6 1.1254 -2.4612 0.4973 9 6 1.6938 -3.6739 -0.2696 10 1 2.5924 -4.0317 0.2330 11 6 0.6735 -4.7769 -0.3848 12 7 0.5074 -5.6498 0.6286 13 8 0.0017 -4.8790 -1.3894 14 7 2.0218 -3.1348 -1.5903 15 7 1.9476 -3.7537 -2.8465 16 6 1.5661 -2.9786 -3.8340 17 6 1.2256 -1.5758 -3.5776 18 6 1.6036 -0.9475 -2.4624 19 6 2.4009 -1.7145 -1.4356 20 1 3.4693 -1.5835 -1.6072 21 1 -0.4850 0.8400 0.0004 22 1 2.9281 -1.2288 0.6166 23 1 1.2196 -2.5946 1.5750 24 1 0.0860 -2.2895 0.2172 25 1 1.0444 -5.5679 1.4322 26 1 -0.1496 -6.3596 0.5546 27 1 1.5033 -3.3744 -4.8369 28 1 0.6506 -1.0340 -4.3140 29 1 1.3442 0.0880 -2.2980 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238621479.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:54 Heat of formation + Delta-G solvation = 70.552965 kcal Electronic energy + Delta-G solvation = -15734.441684 eV Core-core repulsion = 13160.670237 eV Total energy + Delta-G solvation = -2573.771448 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48275 -39.62721 -37.52296 -35.57378 -34.47509 -33.36032 -30.38104 -30.01993 -24.68631 -24.33794 -24.14459 -21.28217 -20.50153 -19.08655 -18.30471 -17.80554 -17.48990 -16.97819 -16.78793 -16.25755 -15.40302 -15.08307 -14.80943 -14.55331 -14.37871 -13.93230 -13.60499 -13.13882 -13.01919 -12.59647 -12.38498 -12.22371 -12.00465 -11.45876 -11.28369 -10.69892 -10.57319 -10.16506 -9.94062 -8.52266 0.41045 0.66552 0.89646 1.24508 1.51911 1.57165 1.71513 1.83288 2.11787 2.55633 3.19517 3.46767 3.60372 3.76602 3.93985 3.96317 4.05521 4.12235 4.36692 4.40938 4.70165 4.73292 4.76470 4.85382 5.19728 5.29806 5.34704 5.53735 5.85664 6.07096 6.42142 6.75414 7.29794 7.43987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C 0.002 3.998 3 Si 0.924 3.076 4 H -0.229 1.229 5 H -0.245 1.245 6 H -0.232 1.232 7 C -0.063 4.063 8 C -0.116 4.116 9 C 0.157 3.843 10 H 0.094 0.906 11 C 0.515 3.485 12 N -0.855 5.855 13 O -0.518 6.518 14 N -0.538 5.538 15 N -0.164 5.164 16 C 0.055 3.945 17 C -0.140 4.140 18 C -0.149 4.149 19 C 0.168 3.832 20 H 0.087 0.913 21 H 0.340 0.660 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.401 0.599 26 H 0.403 0.597 27 H 0.172 0.828 28 H 0.126 0.874 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 2.915 4.258 5.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.233 5.233 2 C -0.247 4.247 3 Si 0.739 3.261 4 H -0.152 1.152 5 H -0.168 1.168 6 H -0.155 1.155 7 C -0.084 4.084 8 C -0.156 4.156 9 C 0.049 3.951 10 H 0.111 0.889 11 C 0.298 3.702 12 N -0.420 5.420 13 O -0.392 6.392 14 N -0.354 5.354 15 N 0.033 4.967 16 C -0.153 4.153 17 C -0.161 4.161 18 C -0.175 4.175 19 C 0.061 3.939 20 H 0.105 0.895 21 H 0.157 0.843 22 H 0.130 0.870 23 H 0.112 0.888 24 H 0.120 0.880 25 H 0.229 0.771 26 H 0.234 0.766 27 H 0.189 0.811 28 H 0.143 0.857 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.594 1.933 3.806 4.995 hybrid contribution -0.418 1.198 0.171 1.281 sum 2.176 3.131 3.977 5.510 Atomic orbital electron populations 1.68135 1.09985 1.37108 1.08031 1.29921 0.96809 1.05118 0.92902 0.85916 0.81414 0.74855 0.83883 1.15188 1.16806 1.15460 1.21364 0.98782 0.92264 0.95974 1.22855 1.01992 0.90945 0.99796 1.21332 0.96574 0.93622 0.83619 0.88890 1.20548 0.83908 0.82662 0.83124 1.43838 1.44257 1.33855 1.20086 1.90793 1.46080 1.72729 1.29570 1.50812 1.75699 1.08083 1.00831 1.76635 1.09215 1.21845 0.88982 1.25487 0.97119 0.92973 0.99734 1.21948 1.01352 0.94460 0.98300 1.23973 1.00907 0.99205 0.93379 1.20853 0.98164 0.82331 0.92588 0.89542 0.84263 0.86993 0.88832 0.87979 0.77065 0.76557 0.81097 0.85657 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 0.06 12.21 56.23 0.69 0.75 15 2 C 0.00 0.00 3.04 -13.90 -0.04 -0.05 15 3 Si 0.92 -2.40 28.36 -169.99 -4.82 -7.22 15 4 H -0.23 0.50 7.11 56.52 0.40 0.90 15 5 H -0.25 0.41 7.11 56.52 0.40 0.81 15 6 H -0.23 0.54 7.11 56.52 0.40 0.95 15 7 C -0.06 0.11 2.84 -90.25 -0.26 -0.15 15 8 C -0.12 0.09 5.82 -24.88 -0.14 -0.05 15 9 C 0.16 0.14 3.70 -68.46 -0.25 -0.11 15 10 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 15 11 C 0.51 1.58 7.34 -10.98 -0.08 1.50 15 12 N -0.86 1.02 8.87 31.22 0.28 1.30 15 13 O -0.52 -4.24 16.34 5.56 0.09 -4.15 15 14 N -0.54 -1.74 3.81 -100.65 -0.38 -2.12 15 15 N -0.16 -0.88 10.72 32.18 0.34 -0.54 15 16 C 0.05 0.18 11.50 -14.44 -0.17 0.01 15 17 C -0.14 -0.27 10.00 -37.87 -0.38 -0.65 15 18 C -0.15 -0.17 8.71 -35.86 -0.31 -0.49 15 19 C 0.17 0.10 3.83 -67.88 -0.26 -0.16 15 20 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 15 21 H 0.34 -0.51 8.23 -40.82 -0.34 -0.84 15 22 H 0.11 -0.53 7.93 -51.93 -0.41 -0.94 15 23 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 15 24 H 0.10 0.23 6.89 -51.93 -0.36 -0.13 15 25 H 0.40 -1.87 8.83 -40.82 -0.36 -2.23 15 26 H 0.40 -0.59 8.93 -40.82 -0.36 -0.96 15 27 H 0.17 0.09 8.06 -52.49 -0.42 -0.34 15 28 H 0.13 0.01 8.06 -52.48 -0.42 -0.41 15 29 H 0.12 -0.05 5.75 -52.48 -0.30 -0.35 15 LS Contribution 245.54 15.07 3.70 3.70 Total: 0.00 -8.76 245.54 -5.04 -13.80 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: -3.04 Total: -5.36 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.90 Total: -0.15 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: 0.93 Total: -0.61 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: 0.09 Total: -4.15 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: -4.82 Total: -7.22 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -8.76 -5.04 -13.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621479.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.358 kcal (2) G-P(sol) polarization free energy of solvation -8.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds