Wall clock time and date at job start Mon Mar 30 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38460 * 120.23010 * 79.99780 * 12 9 7 14 14 N 1.31828 * 121.29523 * 179.97438 * 13 12 9 15 15 C 1.32437 * 121.79933 * 0.02562 * 14 13 12 16 16 N 1.38093 * 119.84962 * 180.02562 * 15 14 13 17 17 C 1.40829 * 120.29652 * 0.02562 * 15 14 13 18 18 C 1.46644 * 120.63870 * 179.97438 * 17 15 14 19 19 O 1.21315 * 120.00304 * 179.97438 * 18 17 15 20 20 C 1.38212 * 120.22396 * 259.71704 * 12 9 7 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 23 23 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 24 24 H 1.08001 * 119.35287 * 359.95892 * 13 12 9 25 25 H 0.97003 * 120.00571 * 0.02562 * 16 15 14 26 26 H 0.97001 * 120.00179 * 180.02562 * 16 15 14 27 27 H 1.08001 * 119.99714 * 359.97438 * 18 17 15 28 28 H 1.08007 * 120.82831 * 0.02789 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8711 -0.6785 0.8962 11 7 4.0062 -0.5040 -1.1930 12 6 4.0138 -2.6149 0.0107 13 6 4.0552 -3.3438 -1.1658 14 7 4.4910 -4.5878 -1.1857 15 6 4.9081 -5.1988 -0.0873 16 7 5.3571 -6.5029 -0.1545 17 6 4.8958 -4.5245 1.1490 18 6 5.3555 -5.1940 2.3701 19 8 5.3404 -4.6020 3.4289 20 6 4.4418 -3.1975 1.1887 21 1 -0.4849 0.8400 0.0004 22 1 3.6862 -0.9633 -2.0325 23 1 3.7367 0.4684 -1.1876 24 1 3.7236 -2.8842 -2.0852 25 1 5.3669 -6.9694 -1.0050 26 1 5.6628 -6.9527 0.6487 27 1 5.7075 -6.2141 2.3267 28 1 4.4223 -2.6467 2.1176 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238623581.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:56 Heat of formation + Delta-G solvation = 8.352170 kcal Electronic energy + Delta-G solvation = -14482.081089 eV Core-core repulsion = 11919.268151 eV Total energy + Delta-G solvation = -2562.812937 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16479 -38.28967 -35.97817 -33.93911 -32.13025 -31.70985 -28.90911 -26.11247 -25.15477 -22.93031 -21.82908 -19.77617 -18.01774 -17.32653 -16.97990 -15.81691 -15.38116 -15.06549 -14.68023 -14.40563 -14.12233 -13.59706 -13.30899 -12.86651 -12.58138 -12.01843 -11.83149 -11.12197 -10.94148 -10.51226 -10.26067 -9.85840 -9.55903 -9.35259 -8.98219 -8.80670 -7.81722 -7.33474 -6.26854 -4.31373 0.94078 1.96264 2.71920 3.11102 3.26476 3.26559 3.54805 4.20168 4.31063 4.34058 4.95131 5.02817 5.14659 5.50895 5.59014 5.73611 5.93708 6.05034 6.38699 6.58263 6.91084 7.13331 7.34763 7.40728 7.46000 7.59472 7.98608 8.20144 8.42184 8.45756 8.79584 9.31829 10.85623 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037486 B = 0.008130 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.769613 B = 3443.029413 C = 3726.856696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.258 1.258 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.217 3.783 10 H 0.051 0.949 11 N -0.849 5.849 12 C -0.137 4.137 13 C 0.196 3.804 14 N -0.555 5.555 15 C 0.427 3.573 16 N -0.849 5.849 17 C -0.316 4.316 18 C 0.391 3.609 19 O -0.471 6.471 20 C 0.022 3.978 21 H 0.267 0.733 22 H 0.330 0.670 23 H 0.320 0.680 24 H 0.159 0.841 25 H 0.404 0.596 26 H 0.404 0.596 27 H 0.087 0.913 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 -9.368 -0.955 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.108 3.892 10 H 0.069 0.931 11 N -0.383 5.383 12 C -0.142 4.142 13 C 0.038 3.962 14 N -0.273 5.273 15 C 0.189 3.811 16 N -0.393 5.393 17 C -0.324 4.324 18 C 0.251 3.749 19 O -0.346 6.346 20 C -0.004 4.004 21 H 0.077 0.923 22 H 0.142 0.858 23 H 0.136 0.864 24 H 0.176 0.824 25 H 0.234 0.766 26 H 0.234 0.766 27 H 0.103 0.897 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.666 -9.535 -0.867 14.333 hybrid contribution -0.769 1.111 0.384 1.405 sum 9.897 -8.424 -0.483 13.006 Atomic orbital electron populations 1.69893 1.06252 1.27288 1.49020 1.25039 0.94842 0.99075 0.94025 0.87008 0.80421 0.83776 0.78657 1.20033 1.21713 1.18289 1.21650 0.89572 0.94959 1.52692 0.90618 1.18324 0.93528 0.86549 0.90838 0.93097 1.59734 1.66917 1.05813 1.05821 1.20698 1.01096 0.99290 0.93072 1.22462 0.88507 0.86937 0.98258 1.67228 1.18981 1.12344 1.28698 1.18327 0.88430 0.85667 0.88701 1.42018 1.72367 1.11289 1.13628 1.20921 1.18049 0.98249 0.95207 1.23338 0.73591 0.91448 0.86508 1.90529 1.43798 1.68209 1.32033 1.21508 0.88341 0.91922 0.98674 0.92302 0.85793 0.86436 0.82437 0.76624 0.76583 0.89696 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.38 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.87 20.39 24.61 -169.99 -4.18 16.21 15 4 H -0.27 -6.09 7.01 56.52 0.40 -5.70 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 15 7 C -0.55 -14.70 9.29 -34.44 -0.32 -15.02 15 8 H 0.08 2.25 7.98 -52.49 -0.42 1.83 15 9 C 0.22 4.94 2.49 -70.02 -0.17 4.77 15 10 H 0.05 1.21 7.07 -51.93 -0.37 0.84 15 11 N -0.85 -17.73 8.98 -6.65 -0.06 -17.79 15 12 C -0.14 -2.78 4.90 -104.55 -0.51 -3.29 15 13 C 0.20 3.66 10.44 -17.47 -0.18 3.47 15 14 N -0.56 -9.53 10.38 -12.14 -0.13 -9.65 15 15 C 0.43 6.43 7.77 -155.22 -1.21 5.22 15 16 N -0.85 -8.41 8.97 31.30 0.28 -8.13 15 17 C -0.32 -5.09 5.90 -104.75 -0.62 -5.71 15 18 C 0.39 5.39 11.11 34.12 0.38 5.77 15 19 O -0.47 -8.26 17.23 5.53 0.10 -8.16 15 20 C 0.02 0.41 9.34 -38.81 -0.36 0.05 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.33 6.37 7.34 -39.29 -0.29 6.09 15 23 H 0.32 6.85 4.31 -39.29 -0.17 6.68 15 24 H 0.16 2.75 6.65 -52.49 -0.35 2.40 15 25 H 0.40 3.45 8.95 -40.82 -0.37 3.08 15 26 H 0.40 2.77 6.81 -40.82 -0.28 2.49 15 27 H 0.09 0.74 6.44 -52.49 -0.34 0.40 15 28 H 0.14 2.64 7.73 -52.48 -0.41 2.24 15 LS Contribution 243.10 15.07 3.66 3.66 Total: -1.00 -31.86 243.10 -4.80 -36.66 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -2.15 Total: 15.39 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -3.09 Total: -2.79 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.87 Total: -60.96 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.10 Total: -8.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.18 Total: 16.21 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.86 -4.80 -36.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623581.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.013 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds