Wall clock time and date at job start Mon Mar 30 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38460 * 120.23010 * 79.99780 * 12 9 7 14 14 N 1.31828 * 121.29523 * 179.97438 * 13 12 9 15 15 C 1.32437 * 121.79933 * 0.02562 * 14 13 12 16 16 N 1.38093 * 119.84962 * 180.02562 * 15 14 13 17 17 C 1.40829 * 120.29652 * 0.02562 * 15 14 13 18 18 C 1.46644 * 120.63870 * 179.97438 * 17 15 14 19 19 O 1.21315 * 120.00304 * 179.97438 * 18 17 15 20 20 C 1.38212 * 120.22396 * 259.71704 * 12 9 7 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 23 23 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 24 24 H 1.08001 * 119.35287 * 359.95892 * 13 12 9 25 25 H 0.97003 * 120.00571 * 0.02562 * 16 15 14 26 26 H 0.97001 * 120.00179 * 180.02562 * 16 15 14 27 27 H 1.08001 * 119.99714 * 359.97438 * 18 17 15 28 28 H 1.08007 * 120.82831 * 0.02789 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8711 -0.6785 0.8962 11 7 4.0062 -0.5040 -1.1930 12 6 4.0138 -2.6149 0.0107 13 6 4.0552 -3.3438 -1.1658 14 7 4.4910 -4.5878 -1.1857 15 6 4.9081 -5.1988 -0.0873 16 7 5.3571 -6.5029 -0.1545 17 6 4.8958 -4.5245 1.1490 18 6 5.3555 -5.1940 2.3701 19 8 5.3404 -4.6020 3.4289 20 6 4.4418 -3.1975 1.1887 21 1 -0.4849 0.8400 0.0004 22 1 3.6862 -0.9633 -2.0325 23 1 3.7367 0.4684 -1.1876 24 1 3.7236 -2.8842 -2.0852 25 1 5.3669 -6.9694 -1.0050 26 1 5.6628 -6.9527 0.6487 27 1 5.7075 -6.2141 2.3267 28 1 4.4223 -2.6467 2.1176 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238623581.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:56 Heat of formation + Delta-G solvation = -18.299611 kcal Electronic energy + Delta-G solvation = -14483.236797 eV Core-core repulsion = 11919.268151 eV Total energy + Delta-G solvation = -2563.968645 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47246 -39.54973 -37.52588 -35.35513 -33.89831 -33.28619 -30.27454 -28.02931 -26.47305 -24.51090 -23.21798 -21.23891 -19.36324 -18.87017 -18.47565 -17.43521 -16.75573 -16.33754 -16.20659 -15.69730 -15.61623 -15.22762 -14.65199 -14.59966 -14.07871 -13.70446 -13.61013 -12.85159 -12.74688 -12.24318 -11.72048 -11.58536 -11.00134 -10.91176 -10.72581 -10.32108 -9.49799 -8.69958 -8.39101 -6.48423 -0.35524 0.56982 1.25288 1.34637 1.43293 1.52750 2.22212 2.52059 2.91831 2.99127 3.26125 3.65194 3.80193 4.12198 4.14881 4.41483 4.49802 4.55308 4.97308 4.99482 5.35350 5.57909 5.60041 6.02256 6.28598 6.36041 6.46640 6.53210 6.56332 6.71161 7.18696 7.26748 8.76671 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037486 B = 0.008130 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.769613 B = 3443.029413 C = 3726.856696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.019 3.981 3 Si 0.938 3.062 4 H -0.250 1.250 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.548 4.548 8 H 0.031 0.969 9 C 0.227 3.773 10 H 0.039 0.961 11 N -0.837 5.837 12 C -0.170 4.170 13 C 0.195 3.805 14 N -0.563 5.563 15 C 0.437 3.563 16 N -0.818 5.818 17 C -0.324 4.324 18 C 0.401 3.599 19 O -0.511 6.511 20 C 0.007 3.993 21 H 0.269 0.731 22 H 0.339 0.661 23 H 0.318 0.682 24 H 0.163 0.837 25 H 0.416 0.584 26 H 0.422 0.578 27 H 0.154 0.846 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.269 -10.741 -1.382 16.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.175 1.175 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.588 4.588 8 H 0.050 0.950 9 C 0.117 3.883 10 H 0.057 0.943 11 N -0.370 5.370 12 C -0.175 4.175 13 C 0.037 3.963 14 N -0.281 5.281 15 C 0.196 3.804 16 N -0.364 5.364 17 C -0.332 4.332 18 C 0.263 3.737 19 O -0.387 6.387 20 C -0.019 4.019 21 H 0.078 0.922 22 H 0.153 0.847 23 H 0.134 0.866 24 H 0.180 0.820 25 H 0.248 0.752 26 H 0.257 0.743 27 H 0.170 0.830 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.874 -10.985 -1.310 16.974 hybrid contribution -1.428 1.316 0.517 2.010 sum 11.446 -9.669 -0.793 15.004 Atomic orbital electron populations 1.70047 1.08200 1.28370 1.51063 1.25898 0.95541 1.03022 0.93631 0.85954 0.79089 0.78704 0.79946 1.17480 1.22160 1.17277 1.21873 0.91916 0.93211 1.51813 0.95033 1.18062 0.90675 0.88602 0.90998 0.94322 1.59670 1.66218 1.05567 1.05584 1.20497 1.04048 0.98454 0.94506 1.22478 0.88441 0.87589 0.97797 1.67295 1.19634 1.11645 1.29510 1.18503 0.87102 0.87079 0.87719 1.41971 1.69991 1.09071 1.15366 1.21233 1.17634 0.97270 0.97081 1.24065 0.71922 0.93212 0.84511 1.90536 1.45405 1.69573 1.33206 1.21561 0.89009 0.93609 0.97757 0.92208 0.84734 0.86643 0.82014 0.75188 0.74349 0.83027 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.08 13.96 21.45 0.30 -56.79 15 2 C 0.02 1.04 5.47 84.66 0.46 1.50 15 3 Si 0.94 42.33 24.61 68.60 1.69 44.02 15 4 H -0.25 -10.27 7.01 99.48 0.70 -9.57 15 5 H -0.29 -13.43 7.11 99.48 0.71 -12.73 15 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 15 7 C -0.55 -30.41 9.29 25.60 0.24 -30.17 15 8 H 0.03 1.97 7.98 -2.91 -0.02 1.95 15 9 C 0.23 10.49 2.49 43.42 0.11 10.60 15 10 H 0.04 1.87 7.07 -2.39 -0.02 1.85 15 11 N -0.84 -34.32 8.98 -174.96 -1.57 -35.90 15 12 C -0.17 -7.00 4.90 -19.82 -0.10 -7.09 15 13 C 0.20 7.22 10.44 84.75 0.89 8.10 15 14 N -0.56 -18.32 10.38 -192.33 -2.00 -20.32 15 15 C 0.44 11.90 7.77 133.78 1.04 12.94 15 16 N -0.82 -12.51 8.97 -54.90 -0.49 -13.00 15 17 C -0.32 -9.84 5.90 -19.95 -0.12 -9.95 15 18 C 0.40 9.81 11.11 70.02 0.78 10.59 15 19 O -0.51 -17.13 17.23 -3.14 -0.05 -17.18 15 20 C 0.01 0.26 9.34 22.77 0.21 0.48 15 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 22 H 0.34 12.90 7.34 -89.69 -0.66 12.24 15 23 H 0.32 13.12 4.31 -89.69 -0.39 12.73 15 24 H 0.16 5.62 6.65 -2.91 -0.02 5.60 15 25 H 0.42 5.18 8.95 -92.71 -0.83 4.35 15 26 H 0.42 3.39 6.81 -92.71 -0.63 2.76 15 27 H 0.15 1.75 6.44 -2.91 -0.02 1.73 15 28 H 0.13 5.00 7.73 -2.91 -0.02 4.97 15 Total: -1.00 -71.94 243.10 0.06 -71.88 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -1.32 Total: 30.30 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 3.51 Total: -3.01 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -3.76 Total: -126.00 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.05 Total: -17.18 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.69 Total: 44.02 kcal Total: -71.94 0.06 -71.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623581.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.579 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds