Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21291 * 119.99991 * 2 1 4 4 N 1.34776 * 119.99544 * 180.27136 * 2 1 3 5 5 C 1.39305 * 119.99474 * 174.01166 * 4 2 1 6 6 C 1.39128 * 120.30536 * 48.84455 * 5 4 2 7 7 O 1.35987 * 120.02896 * 359.97310 * 6 5 4 8 8 C 1.38598 * 119.93565 * 179.97438 * 6 5 4 9 9 C 1.38844 * 120.56637 * 359.97438 * 8 6 5 10 10 C 1.36444 * 120.61950 * 359.97438 * 9 8 6 11 11 C 1.40803 * 120.03790 * 359.77053 * 10 9 8 12 12 C 1.41094 * 120.27230 * 180.27847 * 11 10 9 13 13 H 1.07999 * 119.99892 * 203.16094 * 12 11 10 14 14 C 1.39951 * 120.00278 * 23.15840 * 12 11 10 15 15 N 1.30861 * 119.99497 * 17.79356 * 14 12 11 16 16 Si 1.86793 * 119.99995 * 197.78915 * 14 12 11 17 17 H 1.48508 * 109.47081 * 90.00690 * 16 14 12 18 18 H 1.48507 * 109.47154 * 210.00079 * 16 14 12 19 19 H 1.48502 * 109.47593 * 330.00550 * 16 14 12 20 20 H 1.08997 * 109.46964 * 89.99792 * 1 2 3 21 21 H 1.08999 * 109.47173 * 210.00439 * 1 2 3 22 22 H 1.09002 * 109.46866 * 330.00305 * 1 2 3 23 23 H 0.96992 * 120.00461 * 354.01825 * 4 2 1 24 24 H 0.96694 * 113.99897 * 90.00760 * 7 6 5 25 25 H 1.08010 * 119.71709 * 179.97438 * 8 6 5 26 26 H 1.08004 * 119.69289 * 180.02562 * 9 8 6 27 27 H 1.07998 * 119.97435 * 180.02562 * 10 9 8 28 28 H 0.97003 * 119.99194 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0055 5 6 3.5682 -1.1699 -0.1314 6 6 4.3472 -0.3388 0.6673 7 8 3.7554 0.4819 1.5759 8 6 5.7269 -0.3480 0.5360 9 6 6.3427 -1.1818 -0.3877 10 6 5.6010 -2.0070 -1.1819 11 6 4.1978 -2.0223 -1.0663 12 6 3.4264 -2.8779 -1.8810 13 1 2.3894 -2.6476 -2.0761 14 6 4.0049 -4.0249 -2.4363 15 7 5.1212 -4.4983 -1.9442 16 14 3.1836 -4.8799 -3.8798 17 1 3.6964 -4.3081 -5.1508 18 1 3.4874 -6.3328 -3.8326 19 1 1.7143 -4.6787 -3.8036 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6998 -2.0053 0.0780 24 1 3.6381 0.0827 2.4487 25 1 6.3283 0.2990 1.1576 26 1 7.4190 -1.1779 -0.4779 27 1 6.0908 -2.6516 -1.8966 28 1 5.5219 -5.2936 -2.3288 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257949589.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = -63.739007 kcal Electronic energy + Delta-G solvation = -14920.346870 eV Core-core repulsion = 12322.115073 eV Total energy + Delta-G solvation = -2598.231796 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -39.37105 -37.41162 -35.72763 -33.56340 -33.40457 -30.02263 -29.00731 -27.19476 -25.25408 -21.50618 -20.93646 -19.37175 -17.91961 -16.52496 -16.07441 -15.91416 -15.34668 -14.60148 -14.07045 -13.59592 -13.38997 -12.90498 -12.63461 -12.25709 -11.79518 -11.72259 -11.64793 -11.25295 -10.84982 -10.47443 -10.22128 -10.19766 -9.53958 -9.26867 -9.00890 -8.62689 -7.41038 -7.07952 -6.76676 -4.48201 2.63294 2.76232 2.99482 3.01840 3.12900 3.55202 3.81450 4.22123 4.48326 5.29952 5.44970 5.59529 5.66963 5.76119 6.13724 6.32748 6.53611 6.85817 7.05941 7.07610 7.19638 7.44126 7.69182 7.91916 7.98094 8.04149 8.39765 8.46627 8.66788 8.77286 8.92663 9.26210 10.02949 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.011573 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.918213 B = 2418.789813 C = 3320.969939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.491 3.509 3 O -0.522 6.522 4 N -0.646 5.646 5 C -0.016 4.016 6 C 0.138 3.862 7 O -0.487 6.487 8 C -0.258 4.258 9 C -0.096 4.096 10 C -0.163 4.163 11 C 0.114 3.886 12 C -0.456 4.456 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.786 5.786 16 Si 0.911 3.089 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.262 1.262 20 H 0.086 0.914 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.396 0.604 24 H 0.359 0.641 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.125 0.875 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 -0.779 1.983 5.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.278 3.722 3 O -0.397 6.397 4 N -0.291 5.291 5 C -0.110 4.110 6 C 0.092 3.908 7 O -0.293 6.293 8 C -0.278 4.278 9 C -0.115 4.115 10 C -0.182 4.182 11 C 0.110 3.890 12 C -0.485 4.485 13 H 0.097 0.903 14 C -0.142 4.142 15 N -0.410 5.410 16 Si 0.735 3.265 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.186 1.186 20 H 0.104 0.896 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.231 0.769 24 H 0.210 0.790 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.143 0.857 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.653 0.196 1.466 4.882 hybrid contribution -0.495 -1.263 -0.232 1.376 sum -5.148 -1.067 1.234 5.400 Atomic orbital electron populations 1.21826 0.93157 1.03776 1.03994 1.20705 0.89799 0.84327 0.77397 1.90733 1.70158 1.30924 1.47911 1.42816 1.05906 1.08121 1.72264 1.17917 0.81893 1.07855 1.03325 1.18059 0.89812 0.91517 0.91424 1.85033 1.81897 1.40302 1.22072 1.20490 0.92851 1.07023 1.07455 1.20327 0.97790 0.96561 0.96778 1.21013 0.93564 1.01445 1.02223 1.17452 0.92397 0.90817 0.88325 1.19415 0.98532 1.05094 1.25450 0.90282 1.25941 0.94609 0.96870 0.96816 1.69838 1.16859 1.19042 1.35308 0.86270 0.80586 0.78196 0.81457 1.19177 1.20223 1.18581 0.89558 0.90893 0.89765 0.76890 0.78983 0.88653 0.88903 0.85742 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.31 36.01 0.37 -1.94 15 2 C 0.49 9.91 7.38 -10.98 -0.08 9.83 15 3 O -0.52 -12.99 14.36 -18.16 -0.26 -13.25 15 4 N -0.65 -13.43 4.53 -9.35 -0.04 -13.47 15 5 C -0.02 -0.39 6.06 -82.96 -0.50 -0.89 15 6 C 0.14 3.37 6.11 -39.12 -0.24 3.13 15 7 O -0.49 -11.00 10.52 -43.41 -0.46 -11.46 15 8 C -0.26 -6.14 9.97 -39.22 -0.39 -6.53 15 9 C -0.10 -2.27 9.96 -40.00 -0.40 -2.67 15 10 C -0.16 -4.16 8.65 -39.26 -0.34 -4.50 15 11 C 0.11 2.96 5.60 -106.67 -0.60 2.36 15 12 C -0.46 -11.35 8.58 -37.86 -0.32 -11.67 15 13 H 0.08 1.88 7.50 -52.49 -0.39 1.49 15 14 C 0.08 1.81 5.15 -17.32 -0.09 1.72 15 15 N -0.79 -19.11 10.86 55.55 0.60 -18.51 15 16 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 15 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 18 H -0.28 -5.26 7.11 56.52 0.40 -4.85 15 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 20 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.40 7.18 8.55 -40.82 -0.35 6.83 15 24 H 0.36 6.34 9.06 45.56 0.41 6.75 15 25 H 0.10 2.08 8.06 -52.48 -0.42 1.66 15 26 H 0.09 1.94 8.06 -52.48 -0.42 1.52 15 27 H 0.12 3.23 6.05 -52.49 -0.32 2.91 15 28 H 0.28 6.24 8.30 -40.82 -0.34 5.91 15 LS Contribution 248.97 15.07 3.75 3.75 Total: -1.00 -31.04 248.97 -5.92 -36.96 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -1.89 Total: 14.50 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.59 Total: -11.17 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.56 Total: -31.98 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.72 Total: -24.71 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.04 -5.92 -36.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257949589.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.781 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds