Wall clock time and date at job start Mon Mar 30 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34866 * 117.00072 * 2 1 4 4 O 1.21582 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.46794 * 119.99854 * 180.02562 * 3 2 1 6 6 C 1.40184 * 120.61364 * 269.99832 * 5 3 2 7 7 N 1.38722 * 120.08540 * 359.97438 * 6 5 3 8 8 C 1.39210 * 119.83256 * 179.70815 * 6 5 3 9 9 C 1.38257 * 121.18096 * 0.26959 * 8 6 5 10 10 C 1.37748 * 121.30913 * 359.97438 * 9 8 6 11 11 C 1.40703 * 120.04210 * 359.97438 * 10 9 8 12 12 C 1.40820 * 120.56829 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00475 * 155.68505 * 12 11 10 14 14 C 1.40282 * 119.99597 * 335.68433 * 12 11 10 15 15 N 1.30624 * 120.00494 * 341.97710 * 14 12 11 16 16 Si 1.86799 * 119.99486 * 161.97134 * 14 12 11 17 17 H 1.48499 * 109.47581 * 60.00479 * 16 14 12 18 18 H 1.48506 * 109.46948 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47492 * 300.00044 * 16 14 12 20 20 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47100 * 300.00315 * 1 2 3 22 22 H 1.09001 * 109.46946 * 60.00342 * 1 2 3 23 23 H 0.97001 * 119.99940 * 179.72724 * 7 6 5 24 24 H 0.97005 * 119.99783 * 359.45392 * 7 6 5 25 25 H 1.08004 * 119.41042 * 180.25309 * 8 6 5 26 26 H 1.08007 * 119.34801 * 179.97438 * 9 8 6 27 27 H 1.08006 * 119.98247 * 180.02562 * 10 9 8 28 28 H 0.96995 * 119.99908 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2017 0.0000 4 8 1.4021 2.2214 -0.0005 5 6 3.5302 1.2784 -0.0006 6 6 4.2436 1.3156 1.2056 7 7 3.5660 1.2804 2.4156 8 6 5.6339 1.3822 1.1861 9 6 6.3322 1.4184 -0.0067 10 6 5.6795 1.3894 -1.2193 11 6 4.2747 1.3211 -1.2618 12 6 3.5962 1.2904 -2.4954 13 1 2.6090 0.8569 -2.5581 14 6 4.2026 1.8229 -3.6428 15 7 5.2102 2.6459 -3.5269 16 14 3.5690 1.3547 -5.3366 17 1 2.1459 1.7597 -5.4622 18 1 4.3745 2.0464 -6.3749 19 1 3.6835 -0.1146 -5.5193 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 4.0611 1.3021 3.2495 24 1 2.5970 1.2380 2.4278 25 1 6.1769 1.4063 2.1194 26 1 7.4108 1.4705 0.0128 27 1 6.2464 1.4183 -2.1382 28 1 5.6297 3.0138 -4.3204 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258211890.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:51 Heat of formation + Delta-G solvation = -73.466832 kcal Electronic energy + Delta-G solvation = -14822.801560 eV Core-core repulsion = 12224.147933 eV Total energy + Delta-G solvation = -2598.653627 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44347 -37.32431 -35.34970 -34.56331 -32.68146 -30.12507 -27.95925 -26.78359 -25.43274 -22.52837 -20.80287 -19.64277 -17.50609 -16.81432 -16.27227 -16.00996 -15.31526 -15.01607 -14.77609 -13.68828 -13.06259 -12.94991 -12.51562 -12.17354 -11.97002 -11.70510 -11.39787 -11.18207 -11.08892 -10.62291 -10.17643 -10.06170 -9.86437 -9.59976 -9.30078 -9.05081 -7.49039 -6.95120 -6.48705 -4.53095 2.60377 2.95521 3.00191 3.03767 3.18307 3.28878 3.80440 3.82700 4.53270 4.72627 5.53815 5.54523 5.60104 5.79288 6.15093 6.25895 6.62339 6.84184 6.89953 7.05482 7.17639 7.24579 7.54877 7.74412 7.95407 8.07184 8.29418 8.51850 8.60747 8.69464 8.77446 8.86730 9.97988 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.012800 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.517562 B = 2187.010190 C = 3166.440705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.551 3.449 4 O -0.523 6.523 5 C -0.318 4.318 6 C 0.278 3.722 7 N -0.885 5.885 8 C -0.319 4.319 9 C -0.045 4.045 10 C -0.213 4.213 11 C 0.181 3.819 12 C -0.445 4.445 13 H 0.078 0.922 14 C 0.079 3.921 15 N -0.767 5.767 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.259 1.259 20 H 0.090 0.910 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.389 0.611 24 H 0.384 0.616 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -3.947 3.074 5.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.397 3.603 4 O -0.411 6.411 5 C -0.326 4.326 6 C 0.174 3.826 7 N -0.424 5.424 8 C -0.342 4.342 9 C -0.064 4.064 10 C -0.234 4.234 11 C 0.177 3.823 12 C -0.472 4.472 13 H 0.096 0.904 14 C -0.143 4.143 15 N -0.389 5.389 16 Si 0.736 3.264 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.183 1.183 20 H 0.108 0.892 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.216 0.784 24 H 0.211 0.789 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.840 -3.483 2.864 5.329 hybrid contribution -0.675 -0.028 -0.403 0.786 sum -3.515 -3.511 2.461 5.544 Atomic orbital electron populations 1.23087 0.79025 1.02441 1.01735 1.86849 1.21285 1.35119 1.84628 1.21361 0.89424 0.80197 0.69344 1.90731 1.67696 1.36421 1.46298 1.19202 0.86377 1.33430 0.93556 1.17160 0.91078 0.90811 0.83508 1.42191 1.08203 1.86508 1.05542 1.19583 0.90801 1.26792 0.97049 1.20411 0.97304 0.96084 0.92609 1.21031 0.93551 1.12254 0.96533 1.18097 0.91278 0.84060 0.88866 1.19564 1.02657 1.32786 0.92204 0.90395 1.26027 0.93887 0.92405 1.01947 1.69749 1.17679 1.18706 1.32795 0.86279 0.80037 0.80272 0.79806 1.18718 1.19919 1.18333 0.89157 0.92901 0.92472 0.78352 0.78946 0.89095 0.89114 0.86094 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 101.05 1.07 1.58 15 2 O -0.36 -7.73 10.58 -40.95 -0.43 -8.17 15 3 C 0.55 13.49 5.08 34.19 0.17 13.66 15 4 O -0.52 -13.64 16.90 -19.33 -0.33 -13.97 15 5 C -0.32 -8.22 5.96 -102.37 -0.61 -8.83 15 6 C 0.28 6.42 6.76 -83.65 -0.57 5.86 15 7 N -0.89 -16.46 8.98 32.53 0.29 -16.17 15 8 C -0.32 -7.15 9.83 -39.21 -0.39 -7.54 15 9 C -0.04 -1.04 9.95 -39.75 -0.40 -1.44 15 10 C -0.21 -5.51 8.71 -38.83 -0.34 -5.85 15 11 C 0.18 4.93 5.74 -104.65 -0.60 4.33 15 12 C -0.44 -11.98 8.60 -37.84 -0.33 -12.31 15 13 H 0.08 2.09 7.37 -52.49 -0.39 1.70 15 14 C 0.08 1.97 5.15 -17.30 -0.09 1.88 15 15 N -0.77 -19.36 10.97 55.56 0.61 -18.75 15 16 Si 0.91 18.41 29.60 -169.99 -5.03 13.38 15 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 20 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.39 5.94 8.83 -40.82 -0.36 5.58 15 24 H 0.38 6.92 7.69 -40.82 -0.31 6.61 15 25 H 0.09 1.79 8.06 -52.48 -0.42 1.36 15 26 H 0.09 1.84 8.06 -52.48 -0.42 1.41 15 27 H 0.12 3.15 6.17 -52.48 -0.32 2.82 15 28 H 0.29 6.49 8.29 -40.82 -0.34 6.15 15 LS Contribution 253.58 15.07 3.82 3.82 Total: -1.00 -30.09 253.58 -5.77 -35.86 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -2.63 Total: 12.65 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.07 Total: -8.66 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.90 Total: -34.91 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.76 Total: -22.13 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.09 -5.77 -35.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258211890.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.611 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds