Wall clock time and date at job start Mon Mar 30 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34866 * 117.00072 * 2 1 4 4 O 1.21582 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.46794 * 119.99854 * 180.02562 * 3 2 1 6 6 C 1.40184 * 120.61364 * 269.99832 * 5 3 2 7 7 N 1.38722 * 120.08540 * 359.97438 * 6 5 3 8 8 C 1.39210 * 119.83256 * 179.70815 * 6 5 3 9 9 C 1.38257 * 121.18096 * 0.26959 * 8 6 5 10 10 C 1.37748 * 121.30913 * 359.97438 * 9 8 6 11 11 C 1.40703 * 120.04210 * 359.97438 * 10 9 8 12 12 C 1.40820 * 120.56829 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00475 * 155.68505 * 12 11 10 14 14 C 1.40282 * 119.99597 * 335.68433 * 12 11 10 15 15 N 1.30624 * 120.00494 * 341.97710 * 14 12 11 16 16 Si 1.86799 * 119.99486 * 161.97134 * 14 12 11 17 17 H 1.48499 * 109.47581 * 60.00479 * 16 14 12 18 18 H 1.48506 * 109.46948 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47492 * 300.00044 * 16 14 12 20 20 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47100 * 300.00315 * 1 2 3 22 22 H 1.09001 * 109.46946 * 60.00342 * 1 2 3 23 23 H 0.97001 * 119.99940 * 179.72724 * 7 6 5 24 24 H 0.97005 * 119.99783 * 359.45392 * 7 6 5 25 25 H 1.08004 * 119.41042 * 180.25309 * 8 6 5 26 26 H 1.08007 * 119.34801 * 179.97438 * 9 8 6 27 27 H 1.08006 * 119.98247 * 180.02562 * 10 9 8 28 28 H 0.96995 * 119.99908 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2017 0.0000 4 8 1.4021 2.2214 -0.0005 5 6 3.5302 1.2784 -0.0006 6 6 4.2436 1.3156 1.2056 7 7 3.5660 1.2804 2.4156 8 6 5.6339 1.3822 1.1861 9 6 6.3322 1.4184 -0.0067 10 6 5.6795 1.3894 -1.2193 11 6 4.2747 1.3211 -1.2618 12 6 3.5962 1.2904 -2.4954 13 1 2.6090 0.8569 -2.5581 14 6 4.2026 1.8229 -3.6428 15 7 5.2102 2.6459 -3.5269 16 14 3.5690 1.3547 -5.3366 17 1 2.1459 1.7597 -5.4622 18 1 4.3745 2.0464 -6.3749 19 1 3.6835 -0.1146 -5.5193 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 4.0611 1.3021 3.2495 24 1 2.5970 1.2380 2.4278 25 1 6.1769 1.4063 2.1194 26 1 7.4108 1.4705 0.0128 27 1 6.2464 1.4183 -2.1382 28 1 5.6297 3.0138 -4.3204 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258211890.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:51 Heat of formation + Delta-G solvation = -93.058852 kcal Electronic energy + Delta-G solvation = -14823.651134 eV Core-core repulsion = 12224.147933 eV Total energy + Delta-G solvation = -2599.503200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.24513 -39.11501 -37.15187 -36.36557 -34.45126 -31.98201 -29.68447 -28.30272 -27.28402 -24.32668 -22.64230 -21.43773 -19.35391 -18.59845 -17.98055 -17.78880 -17.09295 -16.64228 -16.45714 -15.38456 -14.77366 -14.69005 -14.18876 -13.90374 -13.74172 -13.39582 -12.98458 -12.90227 -12.80629 -12.24033 -12.02207 -11.70186 -11.69705 -11.37870 -11.14917 -10.85549 -9.38887 -8.78164 -8.25020 -6.48340 0.77276 1.19224 1.31257 1.35153 1.47297 1.57563 2.15252 2.16567 2.67793 3.15734 3.62789 4.29641 4.34094 4.35296 4.51953 4.66298 4.87955 4.97715 5.10049 5.17835 5.38249 5.45435 5.72413 5.88174 6.10911 6.18467 6.46663 6.68844 6.77575 6.94543 6.99904 7.12209 8.17963 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.023221 B = 0.012800 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.517562 B = 2187.010190 C = 3166.440705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.368 6.368 3 C 0.556 3.444 4 O -0.551 6.551 5 C -0.354 4.354 6 C 0.275 3.725 7 N -0.867 5.867 8 C -0.317 4.317 9 C -0.042 4.042 10 C -0.243 4.243 11 C 0.151 3.849 12 C -0.483 4.483 13 H 0.065 0.935 14 C 0.041 3.959 15 N -0.795 5.795 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.256 1.256 19 H -0.253 1.253 20 H 0.133 0.867 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.408 0.592 24 H 0.389 0.611 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -4.589 3.655 6.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.285 6.285 3 C 0.403 3.597 4 O -0.442 6.442 5 C -0.362 4.362 6 C 0.170 3.830 7 N -0.407 5.407 8 C -0.341 4.341 9 C -0.061 4.061 10 C -0.264 4.264 11 C 0.148 3.852 12 C -0.510 4.510 13 H 0.083 0.917 14 C -0.179 4.179 15 N -0.418 5.418 16 Si 0.802 3.198 17 H -0.190 1.190 18 H -0.179 1.179 19 H -0.177 1.177 20 H 0.151 0.849 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.239 0.761 24 H 0.215 0.785 25 H 0.144 0.856 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.910 -4.143 3.501 6.155 hybrid contribution -0.683 0.145 -0.412 0.811 sum -3.593 -3.998 3.089 6.200 Atomic orbital electron populations 1.23532 0.75881 1.05472 1.02196 1.86791 1.24373 1.33402 1.83917 1.21193 0.89219 0.80574 0.68699 1.90697 1.68189 1.37397 1.47879 1.19550 0.87526 1.34724 0.94350 1.17347 0.91685 0.89773 0.84205 1.42070 1.08529 1.85126 1.05001 1.19997 0.90742 1.25130 0.98185 1.20768 0.98984 0.94323 0.92018 1.21025 0.93286 1.14797 0.97284 1.18477 0.92268 0.84742 0.89735 1.19712 1.02770 1.34855 0.93710 0.91712 1.26855 0.93983 0.91733 1.05287 1.69767 1.18543 1.19092 1.34393 0.85253 0.79272 0.80240 0.75054 1.18957 1.17935 1.17707 0.84857 0.91484 0.93056 0.76109 0.78453 0.85604 0.86093 0.87279 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 10.57 113.37 1.20 1.88 15 2 O -0.37 -15.60 10.58 -57.80 -0.61 -16.21 15 3 C 0.56 27.47 5.08 70.06 0.36 27.83 15 4 O -0.55 -29.09 16.90 19.57 0.33 -28.76 15 5 C -0.35 -18.48 5.96 -18.41 -0.11 -18.59 15 6 C 0.28 12.42 6.76 38.76 0.26 12.68 15 7 N -0.87 -30.37 8.98 -50.98 -0.46 -30.83 15 8 C -0.32 -13.55 9.83 22.51 0.22 -13.33 15 9 C -0.04 -1.90 9.95 22.16 0.22 -1.68 15 10 C -0.24 -12.81 8.71 22.76 0.20 -12.61 15 11 C 0.15 8.49 5.74 -19.88 -0.11 8.37 15 12 C -0.48 -26.99 8.60 23.40 0.20 -26.79 15 13 H 0.06 3.63 7.37 -2.91 -0.02 3.61 15 14 C 0.04 2.06 5.15 85.37 0.44 2.50 15 15 N -0.79 -40.94 10.97 21.88 0.24 -40.70 15 16 Si 0.98 38.03 29.60 68.60 2.03 40.06 15 17 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 19 H -0.25 -9.46 7.11 99.48 0.71 -8.75 15 20 H 0.13 2.88 8.14 -2.39 -0.02 2.86 15 21 H 0.07 1.85 8.14 -2.39 -0.02 1.84 15 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.41 11.16 8.83 -92.71 -0.82 10.35 15 24 H 0.39 13.31 7.69 -92.70 -0.71 12.60 15 25 H 0.13 4.44 8.06 -2.91 -0.02 4.41 15 26 H 0.12 4.63 8.06 -2.91 -0.02 4.61 15 27 H 0.11 5.86 6.17 -2.91 -0.02 5.85 15 28 H 0.30 13.55 8.29 -92.71 -0.77 12.78 15 Total: -1.00 -66.35 253.58 4.08 -62.27 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.32 Total: 33.90 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 2.87 Total: -19.73 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -0.22 Total: -71.53 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.28 Total: -44.97 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -66.35 4.08 -62.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258211890.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.793 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds