Wall clock time and date at job start Mon Mar 30 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31471 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48499 * 109.47029 * 264.70239 * 3 2 1 5 5 H 1.48503 * 109.46976 * 24.70009 * 3 2 1 6 6 H 1.48497 * 109.47298 * 144.70210 * 3 2 1 7 7 C 1.38880 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99967 * 336.67117 * 7 2 1 9 9 N 1.37193 * 119.99560 * 156.38504 * 7 2 1 10 10 C 1.47048 * 125.41536 * 342.35506 * 9 7 2 11 11 C 1.54106 * 103.86291 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.54487 * 241.40377 * 11 10 9 13 13 C 1.50697 * 110.54882 * 118.59248 * 11 10 9 14 14 C 1.40899 * 126.28930 * 100.00187 * 13 11 10 15 15 C 1.34844 * 107.41598 * 179.97438 * 14 13 11 16 16 N 1.36344 * 108.21975 * 359.97438 * 15 14 13 17 17 H 0.96999 * 125.63520 * 180.02562 * 16 15 14 18 18 C 1.34851 * 126.29356 * 279.68571 * 13 11 10 19 19 N 1.47054 * 103.86229 * 359.97438 * 11 10 9 20 20 C 1.33951 * 109.17881 * 359.73783 * 19 11 10 21 21 O 1.21579 * 123.04304 * 180.26770 * 20 19 11 22 22 H 0.96993 * 120.00622 * 0.02562 * 1 2 3 23 23 H 1.09007 * 110.54873 * 298.59088 * 10 9 7 24 24 H 1.09002 * 110.55136 * 61.40190 * 10 9 7 25 25 H 1.08000 * 126.28937 * 359.97438 * 14 13 11 26 26 H 1.08002 * 125.89434 * 179.97438 * 15 14 13 27 27 H 1.08002 * 125.88818 * 0.02562 * 18 13 11 28 28 H 0.96999 * 125.40946 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.6081 1.9818 -1.3941 5 1 1.3945 2.6824 0.5851 6 1 3.4857 1.4752 0.8090 7 6 2.0092 -1.2027 0.0005 8 1 1.5355 -2.0996 0.3713 9 7 3.2950 -1.2524 -0.4754 10 6 3.9260 -0.2382 -1.3331 11 6 5.3483 -0.7842 -1.5653 12 1 6.0926 -0.0929 -1.1704 13 6 5.5847 -1.0372 -3.0320 14 6 6.2800 -0.1948 -3.9221 15 6 6.2639 -0.7866 -5.1336 16 7 5.5847 -1.9638 -5.0241 17 1 5.4229 -2.5920 -5.7451 18 6 5.1749 -2.1142 -3.7324 19 7 5.3677 -2.0478 -0.8134 20 6 4.1769 -2.2297 -0.2276 21 8 3.9186 -3.1964 0.4630 22 1 -0.4851 0.8399 -0.0004 23 1 3.3911 -0.1504 -2.2788 24 1 3.9638 0.7244 -0.8230 25 1 6.7411 0.7510 -3.6786 26 1 6.7118 -0.3957 -6.0353 27 1 4.6166 -2.9506 -3.3386 28 1 6.1242 -2.6514 -0.7482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259395489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:50 Heat of formation + Delta-G solvation = 55.001450 kcal Electronic energy + Delta-G solvation = -14983.464302 eV Core-core repulsion = 12422.674229 eV Total energy + Delta-G solvation = -2560.790073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.14154 -39.74526 -35.35081 -33.93196 -31.58961 -30.96292 -28.92885 -27.33415 -25.01182 -22.92815 -20.66730 -19.77894 -19.19123 -18.18967 -17.32255 -16.27882 -15.44569 -14.75325 -14.57004 -14.02754 -13.55363 -13.40656 -12.96085 -12.75734 -12.46281 -12.20150 -12.06622 -12.01518 -11.43689 -10.76500 -10.32323 -9.73276 -9.17665 -8.88331 -8.62221 -8.42234 -7.96893 -7.80924 -6.29635 -3.74612 2.39071 3.00982 3.12910 3.27592 3.30250 3.43167 3.92598 4.18740 4.24944 4.94716 5.10273 5.24870 5.28890 5.36593 5.49452 5.57298 5.84538 6.05576 6.12814 6.31896 6.51657 6.64569 7.05693 7.21965 7.66423 7.77973 7.98140 8.33045 8.69278 9.09783 9.41264 10.07102 10.83667 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.010652 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.650017 B = 2627.875067 C = 3055.920586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.051 3.949 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.289 4.289 8 H 0.115 0.885 9 N -0.482 5.482 10 C 0.081 3.919 11 C 0.201 3.799 12 H 0.085 0.915 13 C -0.178 4.178 14 C -0.188 4.188 15 C -0.024 4.024 16 N -0.562 5.562 17 H 0.413 0.587 18 C 0.015 3.985 19 N -0.749 5.749 20 C 0.660 3.340 21 O -0.613 6.613 22 H 0.273 0.727 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.135 0.865 26 H 0.161 0.839 27 H 0.163 0.837 28 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.723 1.758 -11.275 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.152 4.152 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.415 4.415 8 H 0.133 0.867 9 N -0.208 5.208 10 C -0.043 4.043 11 C 0.093 3.907 12 H 0.103 0.897 13 C -0.185 4.185 14 C -0.213 4.213 15 C -0.154 4.154 16 N -0.157 5.157 17 H 0.249 0.751 18 C -0.117 4.117 19 N -0.412 5.412 20 C 0.362 3.638 21 O -0.495 6.495 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.080 0.920 25 H 0.153 0.847 26 H 0.178 0.822 27 H 0.181 0.819 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 12.149 1.321 -10.972 16.424 hybrid contribution 0.650 0.659 -0.413 1.013 sum 12.799 1.980 -11.385 17.244 Atomic orbital electron populations 1.69779 1.05807 1.27701 1.47683 1.25003 0.95172 0.97804 0.97259 0.87072 0.79652 0.84016 0.78570 1.19958 1.21761 1.19653 1.18878 0.83810 0.97601 1.41260 0.86737 1.43008 1.11679 1.20005 1.46134 1.22661 0.91677 0.93563 0.96399 1.19908 0.96885 0.86736 0.87153 0.89744 1.19668 1.06325 0.97112 0.95439 1.20769 1.06444 1.01402 0.92695 1.21756 1.04593 0.89199 0.99899 1.41989 1.44733 1.18982 1.09982 0.75134 1.21689 1.04877 1.01862 0.83265 1.45118 1.15014 1.25078 1.55950 1.15891 0.80604 0.85251 0.82055 1.90794 1.79931 1.33160 1.45593 0.91685 0.90119 0.92036 0.84680 0.82186 0.81919 0.74396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.96 55.49 0.77 -25.00 15 2 C 0.05 1.46 5.43 -17.47 -0.09 1.37 15 3 Si 0.88 21.02 24.37 -169.99 -4.14 16.87 15 4 H -0.27 -6.08 6.84 56.52 0.39 -5.69 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.27 -6.42 6.86 56.52 0.39 -6.03 15 7 C -0.29 -8.52 10.18 -14.91 -0.15 -8.67 15 8 H 0.12 3.73 7.98 -52.49 -0.42 3.32 15 9 N -0.48 -12.44 2.89 -119.60 -0.35 -12.79 15 10 C 0.08 1.73 5.10 -3.17 -0.02 1.72 15 11 C 0.20 3.47 4.23 -68.20 -0.29 3.18 15 12 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 13 C -0.18 -2.70 5.04 -104.82 -0.53 -3.23 15 14 C -0.19 -2.43 10.81 -39.78 -0.43 -2.86 15 15 C -0.02 -0.26 11.94 -16.75 -0.20 -0.46 15 16 N -0.56 -6.18 6.07 -12.85 -0.08 -6.26 15 17 H 0.41 3.16 8.96 -40.82 -0.37 2.79 15 18 C 0.01 0.21 11.49 -16.75 -0.19 0.02 15 19 N -0.75 -14.18 5.72 -59.33 -0.34 -14.52 15 20 C 0.66 16.45 8.55 -88.39 -0.76 15.70 15 21 O -0.61 -17.66 17.58 5.30 0.09 -17.57 15 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 23 H 0.08 1.72 7.72 -51.92 -0.40 1.32 15 24 H 0.06 1.33 3.53 -51.93 -0.18 1.14 15 25 H 0.14 1.51 8.06 -52.49 -0.42 1.09 15 26 H 0.16 1.20 8.06 -52.49 -0.42 0.78 15 27 H 0.16 2.44 8.06 -52.49 -0.42 2.02 15 28 H 0.42 6.72 8.96 -40.82 -0.37 6.35 15 LS Contribution 241.97 15.07 3.65 3.65 Total: -1.00 -34.66 241.97 -5.64 -40.30 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -2.59 Total: 8.56 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.66 Total: 6.76 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.01 Total: -58.57 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.09 Total: -17.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -34.66 -5.64 -40.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.300 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds