Wall clock time and date at job start Mon Mar 30 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31471 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48499 * 109.47029 * 264.70239 * 3 2 1 5 5 H 1.48503 * 109.46976 * 24.70009 * 3 2 1 6 6 H 1.48497 * 109.47298 * 144.70210 * 3 2 1 7 7 C 1.38880 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99967 * 336.67117 * 7 2 1 9 9 N 1.37193 * 119.99560 * 156.38504 * 7 2 1 10 10 C 1.47048 * 125.41536 * 342.35506 * 9 7 2 11 11 C 1.54106 * 103.86291 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.54487 * 241.40377 * 11 10 9 13 13 C 1.50697 * 110.54882 * 118.59248 * 11 10 9 14 14 C 1.40899 * 126.28930 * 100.00187 * 13 11 10 15 15 C 1.34844 * 107.41598 * 179.97438 * 14 13 11 16 16 N 1.36344 * 108.21975 * 359.97438 * 15 14 13 17 17 H 0.96999 * 125.63520 * 180.02562 * 16 15 14 18 18 C 1.34851 * 126.29356 * 279.68571 * 13 11 10 19 19 N 1.47054 * 103.86229 * 359.97438 * 11 10 9 20 20 C 1.33951 * 109.17881 * 359.73783 * 19 11 10 21 21 O 1.21579 * 123.04304 * 180.26770 * 20 19 11 22 22 H 0.96993 * 120.00622 * 0.02562 * 1 2 3 23 23 H 1.09007 * 110.54873 * 298.59088 * 10 9 7 24 24 H 1.09002 * 110.55136 * 61.40190 * 10 9 7 25 25 H 1.08000 * 126.28937 * 359.97438 * 14 13 11 26 26 H 1.08002 * 125.89434 * 179.97438 * 15 14 13 27 27 H 1.08002 * 125.88818 * 0.02562 * 18 13 11 28 28 H 0.96999 * 125.40946 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.6081 1.9818 -1.3941 5 1 1.3945 2.6824 0.5851 6 1 3.4857 1.4752 0.8090 7 6 2.0092 -1.2027 0.0005 8 1 1.5355 -2.0996 0.3713 9 7 3.2950 -1.2524 -0.4754 10 6 3.9260 -0.2382 -1.3331 11 6 5.3483 -0.7842 -1.5653 12 1 6.0926 -0.0929 -1.1704 13 6 5.5847 -1.0372 -3.0320 14 6 6.2800 -0.1948 -3.9221 15 6 6.2639 -0.7866 -5.1336 16 7 5.5847 -1.9638 -5.0241 17 1 5.4229 -2.5920 -5.7451 18 6 5.1749 -2.1142 -3.7324 19 7 5.3677 -2.0478 -0.8134 20 6 4.1769 -2.2297 -0.2276 21 8 3.9186 -3.1964 0.4630 22 1 -0.4851 0.8399 -0.0004 23 1 3.3911 -0.1504 -2.2788 24 1 3.9638 0.7244 -0.8230 25 1 6.7411 0.7510 -3.6786 26 1 6.7118 -0.3957 -6.0353 27 1 4.6166 -2.9506 -3.3386 28 1 6.1242 -2.6514 -0.7482 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259395489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:50 Heat of formation + Delta-G solvation = 27.442541 kcal Electronic energy + Delta-G solvation = -14984.659346 eV Core-core repulsion = 12422.674229 eV Total energy + Delta-G solvation = -2561.985117 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.36199 -41.30391 -37.30942 -35.84211 -33.61420 -32.21052 -30.05444 -28.80217 -27.06593 -24.44829 -21.81386 -21.50798 -20.34532 -19.39167 -19.13974 -18.14264 -17.32331 -16.49294 -16.39575 -15.20882 -15.09714 -14.54596 -14.49590 -14.42647 -14.17900 -13.97804 -13.57547 -13.30932 -12.79598 -12.50094 -12.38422 -11.67986 -11.21291 -10.90514 -10.28079 -9.75977 -9.57005 -8.98702 -8.49021 -5.99861 1.23507 1.34004 1.39388 1.45380 1.92789 2.19030 2.22056 2.30795 2.58831 3.03298 3.35960 3.75331 4.03453 4.12856 4.35551 4.45507 4.53879 4.69873 4.88007 4.96786 5.26273 5.49775 5.72878 5.98800 6.07003 6.22945 6.38431 6.66671 6.86153 7.03973 7.29338 8.07195 8.68763 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.010652 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.650017 B = 2627.875067 C = 3055.920586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.237 1.237 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.316 4.316 8 H 0.056 0.944 9 N -0.497 5.497 10 C 0.076 3.924 11 C 0.209 3.791 12 H 0.119 0.881 13 C -0.195 4.195 14 C -0.205 4.205 15 C -0.004 4.004 16 N -0.550 5.550 17 H 0.428 0.572 18 C -0.006 4.006 19 N -0.725 5.725 20 C 0.654 3.346 21 O -0.664 6.664 22 H 0.281 0.719 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.155 0.845 26 H 0.201 0.799 27 H 0.145 0.855 28 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.416 4.260 -13.496 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.161 1.161 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.443 4.443 8 H 0.074 0.926 9 N -0.223 5.223 10 C -0.047 4.047 11 C 0.103 3.897 12 H 0.137 0.863 13 C -0.203 4.203 14 C -0.229 4.229 15 C -0.135 4.135 16 N -0.146 5.146 17 H 0.267 0.733 18 C -0.140 4.140 19 N -0.388 5.388 20 C 0.355 3.645 21 O -0.550 6.550 22 H 0.091 0.909 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.172 0.828 26 H 0.218 0.782 27 H 0.162 0.838 28 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 14.891 3.819 -13.258 20.300 hybrid contribution -0.233 -0.214 0.214 0.382 sum 14.658 3.605 -13.044 19.949 Atomic orbital electron populations 1.69886 1.07766 1.29385 1.48181 1.25839 0.95952 1.01696 0.95923 0.85916 0.78116 0.77863 0.80595 1.16126 1.21204 1.18877 1.18472 0.85892 0.96535 1.43388 0.92571 1.42909 1.10813 1.21573 1.47001 1.22923 0.93698 0.92831 0.95292 1.20074 0.95071 0.85762 0.88765 0.86331 1.19566 1.07997 0.98387 0.94390 1.21037 1.06885 1.02216 0.92784 1.22409 1.02439 0.87978 1.00713 1.42008 1.43808 1.19519 1.09226 0.73282 1.21529 1.05775 1.01693 0.84955 1.44872 1.13213 1.26026 1.54649 1.16179 0.82024 0.84345 0.81907 1.90740 1.81292 1.35064 1.47917 0.90935 0.90288 0.91388 0.82773 0.78187 0.83758 0.72619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.47 13.96 21.65 0.30 -55.16 15 2 C 0.01 0.41 5.43 84.90 0.46 0.87 15 3 Si 0.95 42.48 24.37 68.60 1.67 44.15 15 4 H -0.24 -9.24 6.84 99.48 0.68 -8.56 15 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.26 -11.43 6.86 99.48 0.68 -10.75 15 7 C -0.32 -19.51 10.18 84.01 0.86 -18.65 15 8 H 0.06 4.00 7.98 -2.91 -0.02 3.98 15 9 N -0.50 -26.13 2.89 -651.04 -1.88 -28.01 15 10 C 0.08 3.09 5.10 86.65 0.44 3.53 15 11 C 0.21 6.68 4.23 44.51 0.19 6.87 15 12 H 0.12 3.06 8.14 -2.39 -0.02 3.04 15 13 C -0.20 -5.38 5.04 -19.99 -0.10 -5.48 15 14 C -0.20 -4.38 10.81 22.14 0.24 -4.14 15 15 C 0.00 -0.07 11.94 83.21 0.99 0.92 15 16 N -0.55 -10.30 6.07 -194.56 -1.18 -11.48 15 17 H 0.43 5.21 8.96 -92.71 -0.83 4.38 15 18 C -0.01 -0.17 11.49 83.21 0.96 0.78 15 19 N -0.73 -26.76 5.72 -460.35 -2.63 -29.40 15 20 C 0.65 33.36 8.55 179.57 1.54 34.90 15 21 O -0.66 -40.12 17.58 -3.96 -0.07 -40.19 15 22 H 0.28 15.56 8.31 -92.71 -0.77 14.79 15 23 H 0.08 3.23 7.72 -2.38 -0.02 3.21 15 24 H 0.07 2.69 3.53 -2.39 -0.01 2.68 15 25 H 0.15 2.64 8.06 -2.91 -0.02 2.62 15 26 H 0.20 1.73 8.06 -2.91 -0.02 1.71 15 27 H 0.14 4.37 8.06 -2.91 -0.02 4.35 15 28 H 0.43 13.38 8.96 -92.71 -0.83 12.55 15 Total: -1.00 -79.53 241.97 1.27 -78.25 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.50 Total: 22.24 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 5.57 Total: 19.60 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.40 Total: -124.05 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.07 Total: -40.19 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.67 Total: 44.15 kcal Total: -79.53 1.27 -78.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.696 kcal (2) G-P(sol) polarization free energy of solvation -79.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds