Wall clock time and date at job start Mon Mar 30 2020 03:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86807 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47085 * 270.00172 * 3 2 1 5 5 H 1.48500 * 109.46852 * 30.00329 * 3 2 1 6 6 H 1.48504 * 109.46876 * 149.99860 * 3 2 1 7 7 C 1.38879 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99748 * 186.94665 * 7 2 1 9 9 N 1.37184 * 120.00032 * 6.94503 * 7 2 1 10 10 C 1.47061 * 125.41029 * 354.22555 * 9 7 2 11 11 C 1.54100 * 103.86133 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.55165 * 118.73840 * 11 10 9 13 13 C 1.50705 * 110.54944 * 241.40557 * 11 10 9 14 14 C 1.40898 * 126.28995 * 79.99887 * 13 11 10 15 15 C 1.34847 * 107.41747 * 179.73675 * 14 13 11 16 16 N 1.36345 * 108.21833 * 0.42598 * 15 14 13 17 17 H 0.96994 * 125.63773 * 179.82449 * 16 15 14 18 18 C 1.34848 * 126.29334 * 260.00447 * 13 11 10 19 19 N 1.47055 * 103.86461 * 359.97438 * 11 10 9 20 20 C 1.33942 * 109.18071 * 0.02562 * 19 11 10 21 21 O 1.21585 * 123.04549 * 180.02562 * 20 19 11 22 22 H 0.96999 * 119.99568 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.54421 * 61.40966 * 10 9 7 24 24 H 1.09001 * 110.66847 * 298.65553 * 10 9 7 25 25 H 1.07997 * 126.28774 * 0.02562 * 14 13 11 26 26 H 1.07999 * 125.89431 * 180.25289 * 15 14 13 27 27 H 1.08000 * 125.88682 * 0.02562 * 18 13 11 28 28 H 0.97005 * 125.40873 * 179.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 2.4963 2.0465 -1.4000 5 1 1.4462 2.6527 0.7001 6 1 3.5464 1.4402 0.7001 7 6 2.0092 -1.2027 -0.0005 8 1 3.0833 -1.2061 0.1126 9 7 1.3308 -2.3864 -0.1447 10 6 -0.1321 -2.5305 -0.1864 11 6 -0.3490 -4.0463 -0.3590 12 1 -0.9042 -4.4521 0.4867 13 6 -1.0704 -4.3338 -1.6505 14 6 -0.4940 -4.3799 -2.9354 15 6 -1.4784 -4.6725 -3.8092 16 7 -2.6433 -4.7994 -3.1121 17 1 -3.5108 -5.0056 -3.4939 18 6 -2.3863 -4.5942 -1.7889 19 7 1.0147 -4.5954 -0.3969 20 6 1.8957 -3.5945 -0.2697 21 8 3.0993 -3.7668 -0.2687 22 1 -0.4849 0.8401 0.0004 23 1 -0.5462 -1.9853 -1.0347 24 1 -0.5795 -2.1839 0.7452 25 1 0.5461 -4.2160 -3.1755 26 1 -1.3645 -4.7840 -4.8774 27 1 -3.1115 -4.6330 -0.9896 28 1 1.2403 -5.5335 -0.4972 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259395493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:54 Heat of formation + Delta-G solvation = 44.346966 kcal Electronic energy + Delta-G solvation = -14930.792275 eV Core-core repulsion = 12369.540189 eV Total energy + Delta-G solvation = -2561.252086 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87254 -39.38120 -35.02022 -33.83853 -31.08862 -30.42770 -28.99728 -26.87158 -24.89087 -22.00527 -20.50317 -19.92072 -18.98773 -17.99107 -17.00946 -15.62851 -15.10889 -14.78606 -13.93667 -13.81311 -13.38022 -13.10905 -12.94424 -12.59473 -12.18723 -11.72326 -11.45603 -11.27682 -10.97841 -10.80397 -10.27125 -10.11336 -8.98070 -8.69663 -8.38702 -8.11832 -7.79236 -7.60925 -6.16374 -3.62410 2.55473 3.28488 3.29450 3.34621 3.39578 3.58962 4.13082 4.47070 4.49765 5.31173 5.37658 5.45316 5.52364 5.75672 5.81069 5.92260 6.16731 6.45722 6.74126 6.83231 7.14317 7.32468 7.43935 7.46519 7.67027 7.84407 8.22649 8.41518 8.79684 9.40282 9.58758 10.36253 10.93745 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.032741 B = 0.009384 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.996011 B = 2983.021717 C = 3444.092681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.274 4.274 8 H 0.101 0.899 9 N -0.470 5.470 10 C 0.145 3.855 11 C 0.179 3.821 12 H 0.074 0.926 13 C -0.161 4.161 14 C -0.170 4.170 15 C -0.030 4.030 16 N -0.565 5.565 17 H 0.410 0.590 18 C -0.013 4.013 19 N -0.747 5.747 20 C 0.651 3.349 21 O -0.634 6.634 22 H 0.265 0.735 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.132 0.868 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 -7.251 -4.566 12.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.401 4.401 8 H 0.119 0.881 9 N -0.194 5.194 10 C 0.020 3.980 11 C 0.072 3.928 12 H 0.092 0.908 13 C -0.169 4.169 14 C -0.195 4.195 15 C -0.159 4.159 16 N -0.160 5.160 17 H 0.245 0.755 18 C -0.144 4.144 19 N -0.408 5.408 20 C 0.352 3.648 21 O -0.518 6.518 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.150 0.850 26 H 0.176 0.824 27 H 0.179 0.821 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.021 -6.979 -4.581 12.291 hybrid contribution -0.209 0.395 -0.328 0.554 sum -9.230 -6.584 -4.909 12.355 Atomic orbital electron populations 1.69900 1.05515 1.26955 1.51807 1.25152 0.95785 0.99086 0.97839 0.85857 0.79091 0.81087 0.78223 1.20594 1.21119 1.19624 1.19411 0.92626 0.80818 1.47267 0.88087 1.42744 1.04974 1.04205 1.67505 1.22134 0.83417 0.88765 1.03654 1.20355 0.83699 0.96090 0.92685 0.90830 1.19815 0.93263 1.08272 0.95571 1.20783 0.99092 1.07366 0.92224 1.21743 0.85465 1.11171 0.97553 1.41868 1.09603 1.57375 1.07154 0.75489 1.21547 0.97229 1.10068 0.85548 1.44963 1.05673 1.08394 1.81747 1.15870 0.84828 0.81809 0.82245 1.90744 1.12825 1.84853 1.63386 0.92505 0.89759 0.90749 0.85043 0.82437 0.82070 0.75002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 10.40 55.49 0.58 -23.98 15 2 C 0.02 0.59 5.48 -17.47 -0.10 0.50 15 3 Si 0.93 21.49 29.56 -169.99 -5.02 16.46 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.27 -7.97 9.92 -14.92 -0.15 -8.12 15 8 H 0.10 3.04 7.68 -52.49 -0.40 2.63 15 9 N -0.47 -12.89 3.07 -119.60 -0.37 -13.25 15 10 C 0.14 3.41 5.29 -3.16 -0.02 3.39 15 11 C 0.18 3.41 4.22 -68.20 -0.29 3.12 15 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 13 C -0.16 -2.73 5.02 -104.82 -0.53 -3.26 15 14 C -0.17 -2.92 10.49 -39.78 -0.42 -3.33 15 15 C -0.03 -0.40 11.94 -16.75 -0.20 -0.60 15 16 N -0.56 -6.55 6.08 -12.85 -0.08 -6.63 15 17 H 0.41 3.17 8.96 -40.82 -0.37 2.81 15 18 C -0.01 -0.17 11.85 -16.75 -0.20 -0.37 15 19 N -0.75 -15.62 5.75 -59.33 -0.34 -15.97 15 20 C 0.65 17.34 8.55 -88.40 -0.76 16.58 15 21 O -0.63 -19.09 17.53 5.29 0.09 -19.00 15 22 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 23 H 0.08 2.14 6.96 -51.93 -0.36 1.77 15 24 H 0.07 1.80 7.63 -51.93 -0.40 1.41 15 25 H 0.13 2.50 8.06 -52.49 -0.42 2.07 15 26 H 0.16 1.65 8.06 -52.49 -0.42 1.22 15 27 H 0.16 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.41 7.53 8.96 -40.82 -0.37 7.16 15 LS Contribution 247.28 15.07 3.73 3.73 Total: -1.00 -34.16 247.28 -6.78 -40.94 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -2.72 Total: 9.78 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.65 Total: 7.90 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.21 Total: -59.83 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.09 Total: -19.00 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -34.16 -6.78 -40.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.292 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds