Wall clock time and date at job start Mon Mar 30 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86807 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47085 * 270.00172 * 3 2 1 5 5 H 1.48500 * 109.46852 * 30.00329 * 3 2 1 6 6 H 1.48504 * 109.46876 * 149.99860 * 3 2 1 7 7 C 1.38879 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99748 * 186.94665 * 7 2 1 9 9 N 1.37184 * 120.00032 * 6.94503 * 7 2 1 10 10 C 1.47061 * 125.41029 * 354.22555 * 9 7 2 11 11 C 1.54100 * 103.86133 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.55165 * 118.73840 * 11 10 9 13 13 C 1.50705 * 110.54944 * 241.40557 * 11 10 9 14 14 C 1.40898 * 126.28995 * 79.99887 * 13 11 10 15 15 C 1.34847 * 107.41747 * 179.73675 * 14 13 11 16 16 N 1.36345 * 108.21833 * 0.42598 * 15 14 13 17 17 H 0.96994 * 125.63773 * 179.82449 * 16 15 14 18 18 C 1.34848 * 126.29334 * 260.00447 * 13 11 10 19 19 N 1.47055 * 103.86461 * 359.97438 * 11 10 9 20 20 C 1.33942 * 109.18071 * 0.02562 * 19 11 10 21 21 O 1.21585 * 123.04549 * 180.02562 * 20 19 11 22 22 H 0.96999 * 119.99568 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.54421 * 61.40966 * 10 9 7 24 24 H 1.09001 * 110.66847 * 298.65553 * 10 9 7 25 25 H 1.07997 * 126.28774 * 0.02562 * 14 13 11 26 26 H 1.07999 * 125.89431 * 180.25289 * 15 14 13 27 27 H 1.08000 * 125.88682 * 0.02562 * 18 13 11 28 28 H 0.97005 * 125.40873 * 179.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 2.4963 2.0465 -1.4000 5 1 1.4462 2.6527 0.7001 6 1 3.5464 1.4402 0.7001 7 6 2.0092 -1.2027 -0.0005 8 1 3.0833 -1.2061 0.1126 9 7 1.3308 -2.3864 -0.1447 10 6 -0.1321 -2.5305 -0.1864 11 6 -0.3490 -4.0463 -0.3590 12 1 -0.9042 -4.4521 0.4867 13 6 -1.0704 -4.3338 -1.6505 14 6 -0.4940 -4.3799 -2.9354 15 6 -1.4784 -4.6725 -3.8092 16 7 -2.6433 -4.7994 -3.1121 17 1 -3.5108 -5.0056 -3.4939 18 6 -2.3863 -4.5942 -1.7889 19 7 1.0147 -4.5954 -0.3969 20 6 1.8957 -3.5945 -0.2697 21 8 3.0993 -3.7668 -0.2687 22 1 -0.4849 0.8401 0.0004 23 1 -0.5462 -1.9853 -1.0347 24 1 -0.5795 -2.1839 0.7452 25 1 0.5461 -4.2160 -3.1755 26 1 -1.3645 -4.7840 -4.8774 27 1 -3.1115 -4.6330 -0.9896 28 1 1.2403 -5.5335 -0.4972 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259395493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:53 Heat of formation + Delta-G solvation = 18.725648 kcal Electronic energy + Delta-G solvation = -14931.903299 eV Core-core repulsion = 12369.540189 eV Total energy + Delta-G solvation = -2562.363110 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.17037 -41.13834 -37.08526 -35.79645 -33.01607 -31.92545 -30.26105 -28.54983 -26.87442 -23.70516 -21.95556 -21.60262 -20.25442 -19.40058 -18.83441 -17.55618 -17.07019 -16.64597 -15.82946 -15.02375 -14.93627 -14.64623 -14.40925 -14.36519 -13.77217 -13.48122 -13.25173 -12.81195 -12.75240 -12.50412 -12.24727 -12.08443 -11.04994 -10.87353 -10.13980 -9.60255 -9.49438 -8.93228 -8.26809 -5.81876 1.42894 1.44177 1.47961 1.56744 1.98244 2.28297 2.39001 2.61641 2.70198 3.24487 3.70230 4.11882 4.27396 4.30885 4.58408 4.60633 4.82071 4.93440 5.19699 5.37431 5.44932 5.54483 5.58332 6.06404 6.22802 6.28133 6.49768 6.76265 6.96598 7.31433 7.51476 8.28306 8.80844 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.032741 B = 0.009384 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.996011 B = 2983.021717 C = 3444.092681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.008 4.008 3 Si 0.997 3.003 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.076 0.924 9 N -0.487 5.487 10 C 0.152 3.848 11 C 0.192 3.808 12 H 0.109 0.891 13 C -0.200 4.200 14 C -0.216 4.216 15 C -0.010 4.010 16 N -0.544 5.544 17 H 0.433 0.567 18 C 0.012 3.988 19 N -0.728 5.728 20 C 0.639 3.361 21 O -0.680 6.680 22 H 0.272 0.728 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.190 0.810 27 H 0.198 0.802 28 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 -7.364 -5.120 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.448 4.448 8 H 0.094 0.906 9 N -0.211 5.211 10 C 0.028 3.972 11 C 0.085 3.915 12 H 0.127 0.873 13 C -0.208 4.208 14 C -0.241 4.241 15 C -0.141 4.141 16 N -0.140 5.140 17 H 0.273 0.727 18 C -0.121 4.121 19 N -0.389 5.389 20 C 0.340 3.660 21 O -0.569 6.569 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.207 0.793 27 H 0.215 0.785 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -11.697 -7.136 -5.154 14.639 hybrid contribution 0.503 0.425 -0.201 0.688 sum -11.194 -6.711 -5.355 14.107 Atomic orbital electron populations 1.70006 1.06340 1.28198 1.50207 1.25981 0.96829 1.01747 0.96267 0.84881 0.77872 0.76762 0.78453 1.19966 1.19282 1.19758 1.19424 0.92185 0.82604 1.50615 0.90588 1.42944 1.06623 1.04069 1.67447 1.22059 0.81049 0.92117 1.01928 1.20377 0.82844 0.92626 0.95616 0.87328 1.19653 0.94943 1.11893 0.94268 1.20720 0.98681 1.10872 0.93841 1.22046 0.84954 1.08570 0.98547 1.41875 1.10224 1.55478 1.06464 0.72665 1.21941 0.96250 1.06977 0.86971 1.44754 1.05835 1.07992 1.80289 1.16198 0.84805 0.82756 0.82229 1.90678 1.15057 1.85709 1.65427 0.91834 0.91998 0.91917 0.88436 0.79324 0.78492 0.73445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.55 10.40 21.65 0.23 -49.33 15 2 C -0.01 -0.47 5.48 84.90 0.47 0.00 15 3 Si 1.00 44.20 29.56 68.60 2.03 46.23 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.32 -19.47 9.92 84.01 0.83 -18.63 15 8 H 0.08 4.85 7.68 -2.91 -0.02 4.83 15 9 N -0.49 -27.76 3.07 -651.03 -2.00 -29.76 15 10 C 0.15 7.29 5.29 86.64 0.46 7.75 15 11 C 0.19 7.15 4.22 44.51 0.19 7.33 15 12 H 0.11 3.30 8.14 -2.39 -0.02 3.28 15 13 C -0.20 -6.48 5.02 -19.99 -0.10 -6.58 15 14 C -0.22 -7.35 10.49 22.14 0.23 -7.12 15 15 C -0.01 -0.24 11.94 83.21 0.99 0.75 15 16 N -0.54 -10.32 6.08 -194.56 -1.18 -11.50 15 17 H 0.43 4.48 8.96 -92.71 -0.83 3.65 15 18 C 0.01 0.27 11.85 83.21 0.99 1.25 15 19 N -0.73 -30.87 5.75 -460.35 -2.65 -33.52 15 20 C 0.64 35.44 8.55 179.57 1.54 36.97 15 21 O -0.68 -43.05 17.53 -3.98 -0.07 -43.12 15 22 H 0.27 13.86 8.31 -92.71 -0.77 13.09 15 23 H 0.06 3.20 6.96 -2.39 -0.02 3.19 15 24 H 0.06 3.08 7.63 -2.39 -0.02 3.06 15 25 H 0.10 3.91 8.06 -2.91 -0.02 3.89 15 26 H 0.19 3.28 8.06 -2.91 -0.02 3.26 15 27 H 0.20 3.11 8.06 -2.91 -0.02 3.09 15 28 H 0.42 15.61 8.96 -92.70 -0.83 14.78 15 Total: -1.00 -77.63 247.28 1.49 -76.15 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.46 Total: 23.13 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 5.59 Total: 21.72 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -5.60 Total: -124.11 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.07 Total: -43.12 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -77.63 1.49 -76.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.872 kcal (2) G-P(sol) polarization free energy of solvation -77.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds