Wall clock time and date at job start Mon Mar 30 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86801 * 120.00005 * 2 1 4 4 H 1.48500 * 109.46960 * 239.99775 * 3 2 1 5 5 H 1.48500 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47011 * 120.00143 * 3 2 1 7 7 C 1.38881 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 186.94945 * 7 2 1 9 9 N 1.37188 * 120.00282 * 6.94504 * 7 2 1 10 10 C 1.47059 * 125.40879 * 354.23457 * 9 7 2 11 11 C 1.54096 * 103.86364 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.67109 * 241.34466 * 11 10 9 13 13 C 1.50696 * 110.55447 * 118.59430 * 11 10 9 14 14 C 1.34847 * 125.89553 * 119.09992 * 13 11 10 15 15 C 1.40895 * 107.41945 * 179.74031 * 14 13 11 16 16 C 1.34852 * 107.41295 * 359.97438 * 15 14 13 17 17 N 1.36341 * 108.22260 * 0.02562 * 16 15 14 18 18 H 0.96995 * 125.63396 * 179.97438 * 17 16 15 19 19 N 1.47059 * 103.86294 * 359.97438 * 11 10 9 20 20 C 1.33944 * 109.17885 * 0.02562 * 19 11 10 21 21 O 1.21581 * 123.04530 * 180.02562 * 20 19 11 22 22 H 0.96997 * 119.99963 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.54812 * 61.39387 * 10 9 7 24 24 H 1.09008 * 110.54260 * 298.59087 * 10 9 7 25 25 H 1.08001 * 126.28773 * 359.71738 * 14 13 11 26 26 H 1.07998 * 126.28782 * 180.02562 * 15 14 13 27 27 H 1.08000 * 125.88521 * 180.02562 * 16 15 14 28 28 H 0.97000 * 125.40834 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.1025 1.6963 -1.2125 5 1 1.2838 2.7465 0.0006 6 1 3.1025 1.6964 1.2125 7 6 2.0092 -1.2027 0.0005 8 1 3.0832 -1.2061 0.1137 9 7 1.3308 -2.3866 -0.1426 10 6 -0.1321 -2.5307 -0.1843 11 6 -0.3490 -4.0465 -0.3568 12 1 -0.8717 -4.2567 -1.2900 13 6 -1.1136 -4.6082 0.8140 14 6 -2.3152 -5.2174 0.7547 15 6 -2.6633 -5.5922 2.0675 16 6 -1.6608 -5.1983 2.8789 17 7 -0.7069 -4.5935 2.1153 18 1 0.1237 -4.2152 2.4436 19 7 1.0147 -4.5956 -0.3946 20 6 1.8957 -3.5947 -0.2675 21 8 3.0993 -3.7669 -0.2664 22 1 -0.4850 0.8400 0.0004 23 1 -0.5461 -1.9862 -1.0330 24 1 -0.5774 -2.1837 0.7482 25 1 -2.9029 -5.3864 -0.1355 26 1 -3.5665 -6.1021 2.3684 27 1 -1.6206 -5.3379 3.9491 28 1 1.2403 -5.5336 -0.4955 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259494074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:56 Heat of formation + Delta-G solvation = 39.440491 kcal Electronic energy + Delta-G solvation = -14973.243368 eV Core-core repulsion = 12411.778522 eV Total energy + Delta-G solvation = -2561.464847 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01077 -39.48578 -35.17343 -33.96803 -31.06034 -30.55498 -29.62629 -26.82139 -24.96929 -22.12760 -20.17284 -20.12797 -19.84798 -17.76034 -17.06882 -15.85944 -15.31119 -14.73469 -14.16164 -13.87480 -13.45367 -13.21981 -12.76639 -12.70133 -12.35260 -11.96472 -11.78966 -11.47772 -11.03387 -10.94641 -10.42208 -10.26081 -9.13824 -8.91626 -8.54913 -8.46599 -7.83448 -7.74397 -6.32643 -3.80761 2.54511 3.20089 3.23997 3.25399 3.29220 3.66909 3.96497 4.23880 4.32207 5.05994 5.23230 5.39460 5.43431 5.53381 5.72409 5.79476 6.00078 6.47551 6.54724 6.58922 6.90936 7.16069 7.30490 7.45727 7.51624 7.90434 7.98712 8.19945 8.59155 9.19958 9.38148 10.12909 10.77032 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035409 B = 0.009184 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.566166 B = 3048.158822 C = 3474.705399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.281 4.281 8 H 0.103 0.897 9 N -0.469 5.469 10 C 0.139 3.861 11 C 0.173 3.827 12 H 0.097 0.903 13 C 0.024 3.976 14 C -0.196 4.196 15 C -0.206 4.206 16 C -0.018 4.018 17 N -0.542 5.542 18 H 0.415 0.585 19 N -0.753 5.753 20 C 0.645 3.355 21 O -0.627 6.627 22 H 0.268 0.732 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -6.584 2.505 9.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.409 4.409 8 H 0.120 0.880 9 N -0.193 5.193 10 C 0.014 3.986 11 C 0.065 3.935 12 H 0.114 0.886 13 C -0.091 4.091 14 C -0.222 4.222 15 C -0.231 4.231 16 C -0.150 4.150 17 N -0.135 5.135 18 H 0.252 0.748 19 N -0.415 5.415 20 C 0.346 3.654 21 O -0.511 6.511 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.151 0.849 26 H 0.148 0.852 27 H 0.176 0.824 28 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -5.959 -6.213 2.578 8.986 hybrid contribution 0.480 0.567 0.206 0.771 sum -5.479 -5.646 2.784 8.346 Atomic orbital electron populations 1.69862 1.05563 1.27512 1.51049 1.25188 0.95816 0.99266 0.97396 0.85889 0.78688 0.80478 0.78973 1.19948 1.20930 1.20048 1.19374 0.92660 0.80628 1.48192 0.87972 1.42806 1.04771 1.04292 1.67444 1.22209 0.83629 0.88192 1.04539 1.20697 0.83574 0.95364 0.93833 0.88570 1.20657 0.97135 1.06023 0.85287 1.20633 0.96919 1.06846 0.97784 1.20793 1.00300 1.08696 0.93331 1.21778 0.91570 1.04729 0.96962 1.41949 1.18810 1.46005 1.06755 0.74802 1.45165 1.05452 1.08815 1.82049 1.15921 0.84932 0.81797 0.82708 1.90768 1.12642 1.84725 1.62966 0.92122 0.89492 0.90153 0.84924 0.85159 0.82416 0.74677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.56 10.40 55.49 0.58 -22.99 15 2 C 0.02 0.64 5.48 -17.47 -0.10 0.54 15 3 Si 0.93 20.70 29.56 -169.99 -5.02 15.68 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 7 C -0.28 -7.81 9.92 -14.92 -0.15 -7.95 15 8 H 0.10 2.93 7.68 -52.49 -0.40 2.53 15 9 N -0.47 -12.08 3.07 -119.60 -0.37 -12.44 15 10 C 0.14 3.08 5.29 -3.16 -0.02 3.06 15 11 C 0.17 3.10 4.23 -68.21 -0.29 2.81 15 12 H 0.10 1.50 8.13 -51.93 -0.42 1.08 15 13 C 0.02 0.40 5.89 -81.79 -0.48 -0.08 15 14 C -0.20 -2.96 10.76 -39.78 -0.43 -3.39 15 15 C -0.21 -2.89 10.86 -39.78 -0.43 -3.32 15 16 C -0.02 -0.25 11.94 -16.75 -0.20 -0.45 15 17 N -0.54 -8.61 6.08 -9.12 -0.06 -8.67 15 18 H 0.42 6.75 8.96 -40.82 -0.37 6.39 15 19 N -0.75 -14.68 6.01 -59.33 -0.36 -15.04 15 20 C 0.64 16.15 8.55 -88.40 -0.76 15.39 15 21 O -0.63 -18.02 17.53 5.29 0.09 -17.92 15 22 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 23 H 0.09 2.03 7.38 -51.93 -0.38 1.64 15 24 H 0.08 1.89 7.22 -51.92 -0.37 1.52 15 25 H 0.13 1.74 8.06 -52.49 -0.42 1.32 15 26 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 27 H 0.16 1.69 8.06 -52.49 -0.42 1.26 15 28 H 0.41 7.09 8.96 -40.82 -0.37 6.72 15 LS Contribution 247.70 15.07 3.73 3.73 Total: -1.00 -31.23 247.70 -6.97 -38.19 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -2.72 Total: 12.85 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -2.85 Total: 6.61 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.20 Total: -59.13 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.09 Total: -17.92 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.23 -6.97 -38.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259494074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.632 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds