Wall clock time and date at job start Mon Mar 30 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86801 * 120.00005 * 2 1 4 4 H 1.48500 * 109.46960 * 239.99775 * 3 2 1 5 5 H 1.48500 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47011 * 120.00143 * 3 2 1 7 7 C 1.38881 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 186.94945 * 7 2 1 9 9 N 1.37188 * 120.00282 * 6.94504 * 7 2 1 10 10 C 1.47059 * 125.40879 * 354.23457 * 9 7 2 11 11 C 1.54096 * 103.86364 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.67109 * 241.34466 * 11 10 9 13 13 C 1.50696 * 110.55447 * 118.59430 * 11 10 9 14 14 C 1.34847 * 125.89553 * 119.09992 * 13 11 10 15 15 C 1.40895 * 107.41945 * 179.74031 * 14 13 11 16 16 C 1.34852 * 107.41295 * 359.97438 * 15 14 13 17 17 N 1.36341 * 108.22260 * 0.02562 * 16 15 14 18 18 H 0.96995 * 125.63396 * 179.97438 * 17 16 15 19 19 N 1.47059 * 103.86294 * 359.97438 * 11 10 9 20 20 C 1.33944 * 109.17885 * 0.02562 * 19 11 10 21 21 O 1.21581 * 123.04530 * 180.02562 * 20 19 11 22 22 H 0.96997 * 119.99963 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.54812 * 61.39387 * 10 9 7 24 24 H 1.09008 * 110.54260 * 298.59087 * 10 9 7 25 25 H 1.08001 * 126.28773 * 359.71738 * 14 13 11 26 26 H 1.07998 * 126.28782 * 180.02562 * 15 14 13 27 27 H 1.08000 * 125.88521 * 180.02562 * 16 15 14 28 28 H 0.97000 * 125.40834 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.1025 1.6963 -1.2125 5 1 1.2838 2.7465 0.0006 6 1 3.1025 1.6964 1.2125 7 6 2.0092 -1.2027 0.0005 8 1 3.0832 -1.2061 0.1137 9 7 1.3308 -2.3866 -0.1426 10 6 -0.1321 -2.5307 -0.1843 11 6 -0.3490 -4.0465 -0.3568 12 1 -0.8717 -4.2567 -1.2900 13 6 -1.1136 -4.6082 0.8140 14 6 -2.3152 -5.2174 0.7547 15 6 -2.6633 -5.5922 2.0675 16 6 -1.6608 -5.1983 2.8789 17 7 -0.7069 -4.5935 2.1153 18 1 0.1237 -4.2152 2.4436 19 7 1.0147 -4.5956 -0.3946 20 6 1.8957 -3.5947 -0.2675 21 8 3.0993 -3.7669 -0.2664 22 1 -0.4850 0.8400 0.0004 23 1 -0.5461 -1.9862 -1.0330 24 1 -0.5774 -2.1837 0.7482 25 1 -2.9029 -5.3864 -0.1355 26 1 -3.5665 -6.1021 2.3684 27 1 -1.6206 -5.3379 3.9491 28 1 1.2403 -5.5336 -0.4955 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259494074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:56 Heat of formation + Delta-G solvation = 17.061282 kcal Electronic energy + Delta-G solvation = -14974.213803 eV Core-core repulsion = 12411.778522 eV Total energy + Delta-G solvation = -2562.435282 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.37140 -41.13462 -37.15382 -35.83858 -33.02350 -31.70884 -31.09529 -28.45103 -26.82403 -23.73410 -22.04841 -21.28812 -21.04292 -19.48426 -18.65599 -17.67407 -17.19952 -16.51678 -15.89658 -15.28873 -15.05103 -14.64942 -14.39143 -14.27876 -13.77904 -13.55279 -13.27364 -13.02918 -12.76166 -12.64426 -12.24638 -12.13380 -11.12243 -10.97481 -10.27020 -9.75291 -9.68981 -8.93916 -8.33563 -5.90042 1.31092 1.42489 1.43706 1.53311 2.07778 2.23872 2.28560 2.48706 2.61023 3.15753 3.48737 3.83954 3.97634 4.30752 4.46739 4.68863 4.75635 4.86405 5.10922 5.36435 5.40140 5.42088 5.46711 6.11547 6.18015 6.30642 6.37824 6.65461 6.71387 7.20939 7.40357 8.15929 8.73366 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.035409 B = 0.009184 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.566166 B = 3048.158822 C = 3474.705399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.005 4.005 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.323 4.323 8 H 0.079 0.921 9 N -0.483 5.483 10 C 0.147 3.853 11 C 0.188 3.812 12 H 0.127 0.873 13 C -0.007 4.007 14 C -0.188 4.188 15 C -0.215 4.215 16 C -0.014 4.014 17 N -0.553 5.553 18 H 0.409 0.591 19 N -0.732 5.732 20 C 0.637 3.363 21 O -0.673 6.673 22 H 0.274 0.726 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.153 0.847 26 H 0.156 0.844 27 H 0.188 0.812 28 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 -6.885 2.843 11.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.206 4.206 3 Si 0.820 3.180 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.450 4.450 8 H 0.097 0.903 9 N -0.207 5.207 10 C 0.023 3.977 11 C 0.081 3.919 12 H 0.144 0.856 13 C -0.121 4.121 14 C -0.214 4.214 15 C -0.240 4.240 16 C -0.146 4.146 17 N -0.146 5.146 18 H 0.245 0.755 19 N -0.394 5.394 20 C 0.338 3.662 21 O -0.560 6.560 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.171 0.829 26 H 0.174 0.826 27 H 0.205 0.795 28 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -7.625 -6.553 2.908 10.467 hybrid contribution 0.893 0.636 0.148 1.106 sum -6.733 -5.917 3.056 9.470 Atomic orbital electron populations 1.69968 1.06363 1.28533 1.49851 1.25962 0.96750 1.01783 0.96058 0.84950 0.77690 0.76547 0.78856 1.19902 1.19458 1.19700 1.19386 0.92263 0.82331 1.50994 0.90265 1.42948 1.06237 1.04128 1.67402 1.22089 0.81418 0.91303 1.02870 1.20673 0.82796 0.92147 0.96255 0.85563 1.20479 0.98107 1.08459 0.85099 1.20986 0.96018 1.05199 0.99179 1.21176 1.01250 1.08773 0.92791 1.22408 0.90680 1.03088 0.98403 1.42097 1.19082 1.46502 1.06961 0.75538 1.44933 1.05389 1.08439 1.80667 1.16185 0.84841 0.82626 0.82502 1.90713 1.14844 1.85549 1.64919 0.91660 0.91023 0.91898 0.82950 0.82597 0.79455 0.73094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.51 10.40 21.65 0.23 -47.28 15 2 C -0.01 -0.28 5.48 84.90 0.47 0.19 15 3 Si 1.00 42.33 29.56 68.60 2.03 44.36 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 6 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 7 C -0.32 -18.43 9.92 84.01 0.83 -17.60 15 8 H 0.08 4.77 7.68 -2.91 -0.02 4.75 15 9 N -0.48 -25.53 3.07 -651.05 -2.00 -27.53 15 10 C 0.15 6.58 5.29 86.64 0.46 7.04 15 11 C 0.19 6.52 4.23 44.51 0.19 6.71 15 12 H 0.13 3.65 8.13 -2.39 -0.02 3.63 15 13 C -0.01 -0.23 5.89 41.08 0.24 0.01 15 14 C -0.19 -5.12 10.76 22.14 0.24 -4.88 15 15 C -0.22 -5.31 10.86 22.14 0.24 -5.07 15 16 C -0.01 -0.35 11.94 83.21 0.99 0.64 15 17 N -0.55 -16.87 6.08 -182.77 -1.11 -17.98 15 18 H 0.41 13.23 8.96 -92.71 -0.83 12.40 15 19 N -0.73 -28.25 6.01 -460.36 -2.77 -31.01 15 20 C 0.64 32.60 8.55 179.57 1.54 34.13 15 21 O -0.67 -39.88 17.53 -3.97 -0.07 -39.95 15 22 H 0.27 13.51 8.31 -92.71 -0.77 12.74 15 23 H 0.07 3.37 7.38 -2.39 -0.02 3.35 15 24 H 0.06 3.00 7.22 -2.38 -0.02 2.98 15 25 H 0.15 3.44 8.06 -2.91 -0.02 3.41 15 26 H 0.16 2.99 8.06 -2.91 -0.02 2.96 15 27 H 0.19 3.38 8.06 -2.91 -0.02 3.36 15 28 H 0.43 14.22 8.96 -92.71 -0.83 13.39 15 Total: -1.00 -67.94 247.70 1.04 -66.90 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.46 Total: 31.33 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 5.19 Total: 21.17 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -5.66 Total: -123.81 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.07 Total: -39.95 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -67.94 1.04 -66.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259494074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.957 kcal (2) G-P(sol) polarization free energy of solvation -67.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds