Wall clock time and date at job start Mon Mar 30 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31864 * 118.95306 * 2 1 4 4 C 1.32147 * 120.96882 * 180.02562 * 3 2 1 5 5 C 1.39948 * 118.92391 * 0.25468 * 4 3 2 6 6 C 1.47820 * 120.94208 * 179.72965 * 5 4 3 7 7 O 1.21561 * 120.00099 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00399 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00215 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47045 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99505 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99952 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00115 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99897 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47047 * 90.00214 * 14 12 10 16 16 H 1.48504 * 109.47006 * 210.00039 * 14 12 10 17 17 H 1.48502 * 109.47018 * 329.99872 * 14 12 10 18 18 C 1.39953 * 118.11811 * 359.48635 * 5 4 3 19 19 N 1.31867 * 118.95119 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47052 * 90.00092 * 1 2 3 21 21 H 1.08997 * 109.47011 * 210.00031 * 1 2 3 22 22 H 1.09000 * 109.46596 * 329.99789 * 1 2 3 23 23 H 1.08002 * 120.53631 * 179.97438 * 4 3 2 24 24 H 0.96998 * 120.00029 * 0.02562 * 8 6 5 25 25 H 1.08998 * 109.47442 * 300.00326 * 9 8 6 26 26 H 1.09003 * 109.46653 * 60.01035 * 9 8 6 27 27 H 0.96999 * 120.00454 * 180.02562 * 13 12 10 28 28 H 1.08002 * 120.53689 * 180.24356 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1454 1.1538 0.0000 4 6 3.4661 1.2003 -0.0005 5 6 4.1856 0.0000 -0.0065 6 6 5.6638 -0.0001 -0.0133 7 8 6.2716 1.0527 -0.0133 8 7 6.3377 -1.1672 -0.0185 9 6 7.8027 -1.1672 -0.0258 10 6 8.3050 -2.5881 -0.0311 11 1 7.6031 -3.4089 -0.0297 12 6 9.6606 -2.8400 -0.0378 13 7 10.0989 -4.0799 -0.0430 14 14 10.8744 -1.4202 -0.0396 15 1 11.2024 -1.0476 1.3600 16 1 12.1145 -1.8301 -0.7463 17 1 10.2713 -0.2542 -0.7340 18 6 3.4660 -1.2004 -0.0006 19 7 2.1454 -1.1539 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5139 23 1 3.9817 2.1493 -0.0009 24 1 5.8527 -2.0073 -0.0181 25 1 8.1617 -0.6520 -0.9167 26 1 8.1704 -0.6549 0.8633 27 1 11.0526 -4.2572 -0.0474 28 1 3.9817 -2.1493 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259569219.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:01 Heat of formation + Delta-G solvation = 5.819604 kcal Electronic energy + Delta-G solvation = -14013.207976 eV Core-core repulsion = 11450.285218 eV Total energy + Delta-G solvation = -2562.922758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24316 -38.85958 -34.65392 -33.82835 -33.38232 -32.37147 -29.35730 -27.68407 -24.64229 -23.80639 -22.07054 -20.33808 -18.17469 -17.68459 -16.80487 -16.12868 -15.50266 -15.12430 -14.52601 -14.43262 -13.78174 -13.51543 -13.13047 -12.86668 -12.60114 -12.44043 -12.26268 -11.62753 -11.12145 -10.98959 -10.84492 -10.04790 -9.60834 -9.56369 -9.53545 -9.39675 -8.86241 -8.33714 -6.27913 -4.31461 0.40664 0.93699 3.05506 3.22271 3.29156 3.36567 3.61342 3.76795 3.80757 3.98187 4.27358 4.42184 4.77874 5.02517 5.07219 5.16637 5.30472 5.30896 5.65421 5.75110 6.20594 6.65748 6.78263 6.95315 6.99625 7.26250 7.87559 7.97852 8.34409 8.58867 8.72493 9.30789 10.83781 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.061386 B = 0.005776 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.021974 B = 4846.063920 C = 5281.630627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.324 3.676 3 N -0.524 5.524 4 C 0.206 3.794 5 C -0.237 4.237 6 C 0.552 3.448 7 O -0.547 6.547 8 N -0.694 5.694 9 C 0.220 3.780 10 C -0.548 4.548 11 H 0.081 0.919 12 C 0.079 3.921 13 N -0.890 5.890 14 Si 0.877 3.123 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.260 1.260 18 C 0.185 3.815 19 N -0.521 5.521 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.181 0.819 24 H 0.396 0.604 25 H 0.030 0.970 26 H 0.025 0.975 27 H 0.269 0.731 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.260 6.482 0.053 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 N -0.238 5.238 4 C 0.039 3.961 5 C -0.244 4.244 6 C 0.336 3.664 7 O -0.427 6.427 8 N -0.342 5.342 9 C 0.098 3.902 10 C -0.586 4.586 11 H 0.099 0.901 12 C -0.125 4.125 13 N -0.526 5.526 14 Si 0.703 3.297 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.185 1.185 18 C 0.018 3.982 19 N -0.235 5.235 20 H 0.106 0.894 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.198 0.802 24 H 0.231 0.769 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.622 7.079 0.051 17.152 hybrid contribution 1.592 0.080 0.001 1.594 sum -14.030 7.159 0.052 15.751 Atomic orbital electron populations 1.20610 0.85483 1.04322 1.04034 1.23508 0.98479 0.83659 0.88543 1.68381 1.09816 1.30029 1.15572 1.23489 0.88666 0.98562 0.85409 1.22013 0.97017 0.96789 1.08587 1.17798 0.85435 0.85015 0.78135 1.90751 1.69350 1.31225 1.51361 1.46144 1.09818 1.06900 1.71338 1.19596 0.74758 0.98634 0.97193 1.21051 0.93330 0.90316 1.53867 0.90139 1.24786 0.98144 0.95856 0.93739 1.69871 1.15039 1.18739 1.48989 0.86818 0.80847 0.82934 0.79108 1.19772 1.20811 1.18465 1.23582 0.89494 0.98202 0.86959 1.68301 1.09817 1.30112 1.15314 0.89384 0.89413 0.89475 0.80159 0.76933 0.95250 0.95694 0.92142 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.31 36.01 0.37 -0.34 15 2 C 0.32 4.05 7.64 -157.07 -1.20 2.85 15 3 N -0.52 -7.06 10.31 -10.39 -0.11 -7.17 15 4 C 0.21 2.89 10.88 -16.78 -0.18 2.71 15 5 C -0.24 -3.55 5.91 -104.70 -0.62 -4.17 15 6 C 0.55 10.26 7.79 -12.34 -0.10 10.16 15 7 O -0.55 -11.88 16.45 5.31 0.09 -11.79 15 8 N -0.69 -13.45 5.51 -62.43 -0.34 -13.79 15 9 C 0.22 5.20 4.50 -5.19 -0.02 5.17 15 10 C -0.55 -14.54 9.83 -34.44 -0.34 -14.88 15 11 H 0.08 2.21 7.84 -52.49 -0.41 1.80 15 12 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 13 N -0.89 -25.86 13.96 55.43 0.77 -25.09 15 14 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 15 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 17 H -0.26 -6.13 6.54 56.52 0.37 -5.76 15 18 C 0.18 2.47 10.81 -16.77 -0.18 2.29 15 19 N -0.52 -6.95 10.31 -10.39 -0.11 -7.05 15 20 H 0.09 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.09 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.09 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.18 2.33 7.75 -52.49 -0.41 1.92 15 24 H 0.40 6.61 6.46 -40.82 -0.26 6.35 15 25 H 0.03 0.73 7.20 -51.93 -0.37 0.36 15 26 H 0.03 0.61 7.57 -51.93 -0.39 0.22 15 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 28 H 0.18 1.95 6.54 -52.49 -0.34 1.61 15 LS Contribution 253.98 15.07 3.83 3.83 Total: -1.00 -31.60 253.98 -5.53 -37.13 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -2.63 Total: 1.84 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.37 Total: 5.87 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.22 Total: -53.10 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.60 -5.53 -37.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259569219.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.950 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds