Wall clock time and date at job start Mon Mar 30 2020 03:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00344 * 2 1 4 4 H 1.48495 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47115 * 300.00297 * 3 2 1 6 6 H 1.48506 * 109.46905 * 60.00200 * 3 2 1 7 7 C 1.37883 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00295 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00199 * 269.99577 * 10 9 7 12 12 N 1.34771 * 119.99770 * 5.14013 * 11 10 9 13 13 O 1.21574 * 119.99987 * 185.14564 * 11 10 9 14 14 C 1.39401 * 119.99913 * 90.00325 * 10 9 7 15 15 C 1.39037 * 119.70099 * 84.99924 * 14 10 9 16 16 C 1.38349 * 119.10352 * 179.97438 * 15 14 10 17 17 C 1.38846 * 118.49571 * 359.97438 * 16 15 14 18 18 C 1.38061 * 119.31113 * 0.28075 * 17 16 15 19 19 N 1.31943 * 120.84702 * 359.44442 * 18 17 16 20 20 H 0.96998 * 119.99761 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47172 * 59.99295 * 9 7 2 22 22 H 1.08999 * 109.46480 * 299.99937 * 9 7 2 23 23 H 0.97007 * 120.00337 * 0.02562 * 12 11 10 24 24 H 0.96999 * 120.00327 * 180.02562 * 12 11 10 25 25 H 1.07997 * 120.44947 * 0.02562 * 15 14 10 26 26 H 1.07993 * 120.75553 * 179.97438 * 16 15 14 27 27 H 1.07997 * 120.34948 * 179.97438 * 17 16 15 28 28 H 1.08003 * 119.58036 * 179.72422 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.6408 -4.1239 -1.1704 12 7 2.2850 -3.5459 -2.3346 13 8 3.3567 -5.1066 -1.1733 14 6 2.6558 -4.1436 1.2041 15 6 1.9060 -5.1185 1.8524 16 6 2.3673 -5.6372 3.0491 17 6 3.5682 -5.1614 3.5582 18 6 4.2583 -4.1880 2.8638 19 7 3.7963 -3.7156 1.7217 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5563 -0.8918 22 1 0.6240 -2.5575 0.8880 23 1 1.7140 -2.7617 -2.3323 24 1 2.5998 -3.9140 -3.1751 25 1 0.9763 -5.4668 1.4271 26 1 1.8061 -6.3951 3.5754 27 1 3.9560 -5.5450 4.4903 28 1 5.1907 -3.8115 3.2581 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:16 Heat of formation + Delta-G solvation = 14.405286 kcal Electronic energy + Delta-G solvation = -14774.325022 eV Core-core repulsion = 12211.774567 eV Total energy + Delta-G solvation = -2562.550454 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17388 -38.60981 -35.01589 -32.93241 -32.57936 -31.98791 -29.66974 -27.15585 -23.24037 -23.17866 -22.86476 -19.79812 -17.81342 -16.81677 -16.33313 -16.15217 -15.72742 -15.19578 -14.47080 -14.04972 -13.80448 -13.44805 -12.82195 -12.72478 -12.37081 -11.76186 -11.54320 -11.05277 -10.85457 -10.26273 -9.89587 -9.59792 -9.46563 -9.06913 -8.96749 -8.61339 -8.55360 -7.91083 -6.19944 -4.25941 1.49116 1.70227 3.23037 3.31582 3.36577 3.45878 3.93499 4.21333 4.35072 4.90620 5.12687 5.13785 5.15896 5.40354 5.54328 5.60888 6.05238 6.38417 6.45651 6.63712 6.92369 7.07628 7.28091 7.57526 7.78620 7.84211 8.00754 8.51491 8.56959 8.87280 9.35690 9.43532 10.87122 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.010172 C = 0.008563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.914682 B = 2752.125669 C = 3269.268071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.069 0.931 9 C 0.244 3.756 10 N -0.574 5.574 11 C 0.723 3.277 12 N -0.859 5.859 13 O -0.617 6.617 14 C 0.401 3.599 15 C -0.162 4.162 16 C -0.073 4.073 17 C -0.189 4.189 18 C 0.110 3.890 19 N -0.476 5.476 20 H 0.265 0.735 21 H 0.042 0.958 22 H 0.038 0.962 23 H 0.410 0.590 24 H 0.404 0.596 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 -7.015 3.334 7.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.125 3.875 10 N -0.309 5.309 11 C 0.423 3.577 12 N -0.427 5.427 13 O -0.497 6.497 14 C 0.174 3.826 15 C -0.185 4.185 16 C -0.099 4.099 17 C -0.209 4.209 18 C -0.048 4.048 19 N -0.187 5.187 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.242 0.758 24 H 0.235 0.765 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.573 -6.851 3.029 7.920 hybrid contribution -0.278 0.772 0.172 0.838 sum 2.294 -6.079 3.201 7.243 Atomic orbital electron populations 1.69932 1.06004 1.27269 1.50170 1.24960 0.94862 0.99402 0.94750 0.86402 0.80327 0.82950 0.77617 1.19530 1.20880 1.20930 1.21630 0.94178 0.90052 1.51368 0.91298 1.19474 0.86872 0.82411 0.98758 1.44761 1.47274 1.37769 1.01095 1.15684 0.79150 0.82028 0.80841 1.43025 1.57811 1.35465 1.06448 1.90868 1.43167 1.28787 1.86887 1.17805 0.88669 0.89314 0.86783 1.22078 1.01858 0.97831 0.96697 1.21383 0.95513 0.98323 0.94703 1.22035 0.96869 1.00206 1.01794 1.22535 0.98964 0.93253 0.90079 1.67409 1.13751 1.25804 1.11712 0.92581 0.94042 0.94403 0.75820 0.76523 0.84962 0.84997 0.85127 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 13.29 55.43 0.74 -23.79 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.53 -14.21 9.33 -34.44 -0.32 -14.53 15 8 H 0.07 1.95 7.81 -52.48 -0.41 1.54 15 9 C 0.24 5.90 4.81 -5.20 -0.03 5.88 15 10 N -0.57 -13.14 2.56 -122.06 -0.31 -13.46 15 11 C 0.72 16.29 8.50 -86.92 -0.74 15.56 15 12 N -0.86 -15.80 8.72 27.63 0.24 -15.55 15 13 O -0.62 -15.40 17.16 5.30 0.09 -15.31 15 14 C 0.40 8.80 5.44 -154.71 -0.84 7.96 15 15 C -0.16 -2.94 10.02 -39.24 -0.39 -3.33 15 16 C -0.07 -1.06 10.17 -39.32 -0.40 -1.46 15 17 C -0.19 -2.65 10.11 -39.42 -0.40 -3.05 15 18 C 0.11 1.86 11.17 -17.57 -0.20 1.66 15 19 N -0.48 -10.38 10.39 -12.37 -0.13 -10.51 15 20 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 21 H 0.04 0.98 6.59 -51.93 -0.34 0.64 15 22 H 0.04 0.97 8.05 -51.93 -0.42 0.55 15 23 H 0.41 7.53 6.65 -40.82 -0.27 7.25 15 24 H 0.40 6.18 8.93 -40.82 -0.36 5.81 15 25 H 0.13 2.18 8.06 -52.49 -0.42 1.76 15 26 H 0.13 1.42 8.06 -52.49 -0.42 0.99 15 27 H 0.13 1.32 8.06 -52.49 -0.42 0.90 15 28 H 0.15 2.03 8.06 -52.48 -0.42 1.61 15 LS Contribution 256.54 15.07 3.87 3.87 Total: -1.00 -32.61 256.54 -6.57 -39.18 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -2.63 Total: 9.35 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -3.41 Total: 10.26 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.54 Total: -63.31 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.09 Total: -15.31 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.61 -6.57 -39.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.585 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds