Wall clock time and date at job start Mon Mar 30 2020 03:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38714 * 120.42128 * 2 1 4 4 C 1.39632 * 118.25889 * 179.97438 * 3 2 1 5 5 C 1.48241 * 120.55906 * 179.97438 * 4 3 2 6 6 O 1.21543 * 120.00064 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99641 * 179.97438 * 5 4 3 8 8 C 1.36687 * 119.99614 * 179.72178 * 7 5 4 9 9 H 1.08001 * 120.00360 * 0.27778 * 8 7 5 10 10 C 1.39179 * 119.99938 * 180.28059 * 8 7 5 11 11 N 1.31274 * 119.99938 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00190 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47423 * 89.99432 * 12 10 8 14 14 H 1.48497 * 109.46877 * 210.00134 * 12 10 8 15 15 H 1.48497 * 109.46508 * 329.99417 * 12 10 8 16 16 N 1.33197 * 118.88270 * 0.24646 * 4 3 2 17 17 C 1.31548 * 120.71394 * 359.49515 * 16 4 3 18 18 C 1.50706 * 119.03792 * 180.24238 * 17 16 4 19 19 N 1.31915 * 121.92451 * 0.52411 * 17 16 4 20 20 H 1.09000 * 109.47040 * 89.99784 * 1 2 3 21 21 H 1.09000 * 109.46996 * 210.00135 * 1 2 3 22 22 H 1.08995 * 109.47047 * 329.99988 * 1 2 3 23 23 H 1.08002 * 120.87116 * 359.95815 * 3 2 1 24 24 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 25 25 H 0.97004 * 120.00457 * 180.02562 * 11 10 8 26 26 H 1.08998 * 109.46821 * 270.27708 * 18 17 16 27 27 H 1.08999 * 109.46768 * 30.27034 * 18 17 16 28 28 H 1.08998 * 109.47431 * 150.27614 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2094 1.1962 0.0000 4 6 3.6048 1.1435 0.0006 5 6 4.4061 2.3906 0.0000 6 8 3.8490 3.4709 -0.0014 7 7 5.7523 2.3266 0.0011 8 6 6.4912 3.4765 -0.0052 9 1 5.9963 4.4364 -0.0064 10 6 7.8814 3.4104 -0.0100 11 7 8.4830 2.2436 -0.0080 12 14 8.8913 4.9819 -0.0178 13 1 9.1638 5.4022 1.3801 14 1 10.1763 4.7410 -0.7218 15 1 8.1362 6.0518 -0.7181 16 7 4.2037 -0.0462 -0.0040 17 6 3.4956 -1.1549 0.0011 18 6 4.2124 -2.4806 0.0013 19 7 2.1766 -1.1402 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5138 23 1 1.6907 2.1434 -0.0007 24 1 6.1969 1.4644 0.0018 25 1 9.4520 2.1975 -0.0110 26 1 4.3856 -2.8000 -1.0263 27 1 5.1678 -2.3769 0.5155 28 1 3.6021 -3.2236 0.5147 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259687701.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:43 Heat of formation + Delta-G solvation = -23.254788 kcal Electronic energy + Delta-G solvation = -14283.436764 eV Core-core repulsion = 11719.253246 eV Total energy + Delta-G solvation = -2564.183518 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.18807 -39.95251 -36.28210 -35.57229 -34.34881 -33.38941 -30.10540 -29.08784 -27.75835 -25.13696 -23.13684 -21.48828 -20.18683 -19.13732 -17.69071 -16.95283 -16.59181 -16.35436 -15.86157 -15.58866 -15.36317 -14.61383 -14.23091 -14.02305 -13.65213 -13.30258 -13.20589 -13.06554 -12.96082 -12.58248 -12.12898 -11.92651 -11.69888 -11.45636 -11.02338 -10.40567 -10.23627 -10.23277 -8.66108 -6.10067 -0.48891 -0.06371 1.36964 1.39926 1.54649 1.89979 2.19320 2.66560 2.72465 2.94610 3.09412 3.17044 3.75607 3.98600 4.01314 4.42274 4.50982 4.71137 4.71672 4.76757 4.90174 4.99310 5.16406 5.24148 5.47698 5.75474 5.91634 6.36649 6.87086 7.00986 7.30082 7.84740 8.49885 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.043076 B = 0.007134 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.852487 B = 3923.791394 C = 4553.190179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.179 3.821 3 C -0.200 4.200 4 C 0.142 3.858 5 C 0.451 3.549 6 O -0.626 6.626 7 N -0.519 5.519 8 C -0.341 4.341 9 H 0.094 0.906 10 C -0.006 4.006 11 N -0.896 5.896 12 Si 1.008 2.992 13 H -0.265 1.265 14 H -0.265 1.265 15 H -0.266 1.266 16 N -0.535 5.535 17 C 0.305 3.695 18 C -0.078 4.078 19 N -0.524 5.524 20 H 0.103 0.897 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.158 0.842 24 H 0.404 0.596 25 H 0.288 0.712 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 -7.840 -0.032 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.032 3.968 3 C -0.224 4.224 4 C -0.003 4.003 5 C 0.239 3.761 6 O -0.515 6.515 7 N -0.151 5.151 8 C -0.471 4.471 9 H 0.112 0.888 10 C -0.209 4.209 11 N -0.533 5.533 12 Si 0.829 3.171 13 H -0.190 1.190 14 H -0.189 1.189 15 H -0.191 1.191 16 N -0.254 5.254 17 C 0.038 3.962 18 C -0.136 4.136 19 N -0.242 5.242 20 H 0.122 0.878 21 H 0.114 0.886 22 H 0.117 0.883 23 H 0.176 0.824 24 H 0.240 0.760 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.543 -8.056 -0.038 11.742 hybrid contribution 0.541 1.167 -0.018 1.287 sum -8.002 -6.889 -0.056 10.559 Atomic orbital electron populations 1.20908 0.83797 1.05488 1.05193 1.22459 0.99699 0.86616 0.88040 1.22819 0.93785 1.02148 1.03645 1.21764 0.93163 0.91840 0.93545 1.17814 0.82806 0.87543 0.87984 1.90550 1.71347 1.29416 1.60196 1.41907 1.04776 1.10214 1.58201 1.20015 0.89450 0.87498 1.50175 0.88848 1.26452 0.97334 1.02561 0.94600 1.69656 1.11985 1.26135 1.45549 0.84718 0.77024 0.76140 0.79185 1.18958 1.18882 1.19063 1.68299 1.42528 0.98569 1.15969 1.24008 0.87192 0.95303 0.89742 1.20682 0.99970 0.87929 1.05038 1.68170 1.09403 1.30468 1.16113 0.87832 0.88572 0.88321 0.82424 0.76042 0.90197 0.88223 0.89553 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.22 71.24 0.73 -1.04 15 2 C 0.18 5.38 6.83 42.62 0.29 5.67 15 3 C -0.20 -7.42 9.41 22.72 0.21 -7.21 15 4 C 0.14 6.42 6.79 41.94 0.28 6.71 15 5 C 0.45 24.42 7.77 86.90 0.68 25.09 15 6 O -0.63 -36.71 16.00 -3.85 -0.06 -36.78 15 7 N -0.52 -29.22 5.27 -309.31 -1.63 -30.85 15 8 C -0.34 -19.76 9.68 84.16 0.81 -18.94 15 9 H 0.09 5.60 7.15 -2.91 -0.02 5.58 15 10 C -0.01 -0.31 5.50 85.00 0.47 0.16 15 11 N -0.90 -48.29 13.04 21.70 0.28 -48.01 15 12 Si 1.01 41.48 29.55 68.60 2.03 43.51 15 13 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 14 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 15 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 16 N -0.53 -22.50 9.60 -177.12 -1.70 -24.20 15 17 C 0.30 10.47 7.64 138.79 1.06 11.53 15 18 C -0.08 -1.90 10.31 71.24 0.73 -1.17 15 19 N -0.52 -16.64 10.25 -176.08 -1.81 -18.44 15 20 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 21 H 0.10 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.10 1.49 8.10 -2.39 -0.02 1.47 15 23 H 0.16 5.55 7.74 -2.91 -0.02 5.53 15 24 H 0.40 22.48 7.28 -92.71 -0.67 21.81 15 25 H 0.29 14.18 8.31 -92.71 -0.77 13.41 15 26 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 28 H 0.11 2.05 8.14 -2.39 -0.02 2.03 15 Total: -1.00 -69.25 258.45 2.90 -66.34 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.52 Total: 27.62 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 5.27 Total: 20.80 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -4.85 Total: -121.50 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.06 Total: -36.78 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -69.25 2.90 -66.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259687701.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.090 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds