Wall clock time and date at job start Mon Mar 30 2020 04:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40543 * 126.58427 * 2 1 4 4 N 1.29215 * 108.76889 * 179.76284 * 3 2 1 5 5 C 1.33244 * 109.24798 * 0.42845 * 4 3 2 6 6 C 1.33614 * 126.57942 * 180.31793 * 2 1 3 7 7 C 1.50446 * 129.88505 * 0.24050 * 6 2 1 8 8 C 1.53199 * 109.26798 * 159.62442 * 7 6 2 9 9 H 1.08993 * 109.25615 * 292.05367 * 8 7 6 10 10 C 1.50693 * 109.25823 * 172.56854 * 8 7 6 11 11 H 1.08001 * 120.00833 * 0.02562 * 10 8 7 12 12 C 1.37882 * 119.99656 * 180.02562 * 10 8 7 13 13 N 1.31517 * 120.00056 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00015 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47015 * 89.99669 * 14 12 10 16 16 H 1.48501 * 109.46966 * 209.99581 * 14 12 10 17 17 H 1.48497 * 109.47214 * 329.99700 * 14 12 10 18 18 C 1.53201 * 110.54852 * 52.32888 * 8 7 6 19 19 C 1.47504 * 130.35426 * 179.86217 * 5 4 3 20 20 O 1.21313 * 122.38628 * 348.33542 * 19 5 4 21 21 H 1.08999 * 109.46892 * 269.68668 * 1 2 3 22 22 H 1.09000 * 109.46803 * 29.67841 * 1 2 3 23 23 H 1.09000 * 109.47214 * 149.68635 * 1 2 3 24 24 H 1.09002 * 109.50266 * 279.55946 * 7 6 2 25 25 H 1.09001 * 109.50785 * 39.68197 * 7 6 2 26 26 H 0.96995 * 119.99775 * 180.02562 * 13 12 10 27 27 H 1.09000 * 109.63320 * 54.94967 * 18 8 7 28 28 H 1.08996 * 109.62919 * 175.34356 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3027 1.1285 0.0000 4 7 3.5329 0.7332 0.0051 5 6 3.5662 -0.5988 -0.0009 6 6 2.2613 -1.0729 -0.0060 7 6 1.9092 -2.5356 -0.0189 8 6 3.1106 -3.3403 -0.5249 9 1 3.2744 -3.1173 -1.5791 10 6 2.8256 -4.8115 -0.3665 11 1 1.8846 -5.1375 0.0515 12 6 3.7664 -5.7417 -0.7551 13 7 4.9121 -5.3448 -1.2646 14 14 3.4129 -7.5655 -0.5595 15 1 2.7600 -8.0780 -1.7908 16 1 4.6865 -8.2951 -0.3341 17 1 2.5112 -7.7731 0.6020 18 6 4.3708 -2.9820 0.2692 19 6 4.7138 -1.5255 -0.0015 20 8 5.8503 -1.1522 -0.2033 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3633 0.8929 -0.5088 23 1 -0.3633 -0.8871 -0.5187 24 1 1.6547 -2.8576 0.9909 25 1 1.0575 -2.6991 -0.6792 26 1 5.5737 -5.9992 -1.5383 27 1 4.1850 -3.1226 1.3341 28 1 5.1961 -3.6204 -0.0459 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691825.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:40 Heat of formation + Delta-G solvation = 26.998523 kcal Electronic energy + Delta-G solvation = -14855.123363 eV Core-core repulsion = 12293.118992 eV Total energy + Delta-G solvation = -2562.004371 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.27915 -39.94446 -37.37383 -35.64777 -34.11766 -30.95494 -29.72412 -28.50489 -27.08869 -24.08669 -23.09625 -21.77191 -20.07974 -18.57970 -17.95743 -17.18955 -16.71888 -16.41636 -15.65798 -15.45875 -15.20228 -14.74016 -14.18686 -14.04091 -13.92977 -13.44915 -13.05144 -12.82418 -12.42302 -12.30597 -12.16833 -11.94101 -11.48122 -11.33244 -11.10842 -10.58684 -10.39862 -10.00217 -8.06725 -6.23263 0.09436 0.41481 1.18787 1.52486 1.55677 1.63764 1.96038 2.48964 2.90651 3.24467 3.41209 3.58136 3.72003 4.27589 4.34838 4.44166 4.49930 4.66476 4.70855 4.75973 4.87592 4.93962 5.19752 5.50972 5.62802 5.77041 5.97420 6.24725 6.52133 6.89585 7.00257 7.48389 8.98100 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037766 B = 0.009078 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.226734 B = 3083.764250 C = 3738.335913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.339 5.339 3 N -0.115 5.115 4 N -0.223 5.223 5 C -0.168 4.168 6 C 0.136 3.864 7 C -0.039 4.039 8 C 0.058 3.942 9 H 0.003 0.997 10 C -0.522 4.522 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.921 5.921 14 Si 0.959 3.041 15 H -0.280 1.280 16 H -0.296 1.296 17 H -0.257 1.257 18 C -0.143 4.143 19 C 0.437 3.563 20 O -0.504 6.504 21 H 0.115 0.885 22 H 0.114 0.886 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.262 0.738 27 H 0.098 0.902 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.378 3.209 3.817 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.121 5.121 3 N -0.094 5.094 4 N -0.092 5.092 5 C -0.309 4.309 6 C -0.007 4.007 7 C -0.078 4.078 8 C 0.039 3.961 9 H 0.021 0.979 10 C -0.560 4.560 11 H 0.102 0.898 12 C -0.187 4.187 13 N -0.560 5.560 14 Si 0.785 3.215 15 H -0.206 1.206 16 H -0.223 1.223 17 H -0.181 1.181 18 C -0.181 4.181 19 C 0.315 3.685 20 O -0.380 6.380 21 H 0.134 0.866 22 H 0.132 0.868 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.133 0.867 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.677 4.958 3.649 14.093 hybrid contribution 0.422 -1.639 -0.241 1.710 sum -12.255 3.319 3.408 13.146 Atomic orbital electron populations 1.22796 0.69252 1.07785 1.07005 1.50258 1.10543 1.04305 1.46989 1.82047 0.93221 1.06900 1.27231 1.74223 1.13529 1.11846 1.09616 1.22739 0.96804 0.90604 1.20783 1.23197 0.89718 0.93986 0.93818 1.20694 1.00886 0.80893 1.05283 1.18604 0.88691 0.94796 0.94018 0.97891 1.21427 1.02847 0.90011 1.41674 0.89789 1.25803 0.94862 1.03393 0.94622 1.69995 1.07875 1.35396 1.42722 0.85535 0.77246 0.79922 0.78806 1.20569 1.22270 1.18051 1.22464 1.04651 0.88733 1.02279 1.23099 0.84958 0.91344 0.69088 1.90426 1.25345 1.82481 1.39769 0.86650 0.86789 0.85653 0.86040 0.86719 0.92924 0.88357 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 11.40 127.77 1.46 2.36 15 2 N -0.34 -9.36 4.01 -354.37 -1.42 -10.78 15 3 N -0.12 -4.16 13.78 37.02 0.51 -3.65 15 4 N -0.22 -9.61 12.38 -49.28 -0.61 -10.22 15 5 C -0.17 -7.07 7.20 41.52 0.30 -6.77 15 6 C 0.14 4.43 6.88 42.35 0.29 4.73 15 7 C -0.04 -1.14 5.21 29.83 0.16 -0.99 15 8 C 0.06 2.46 2.05 -11.41 -0.02 2.44 15 9 H 0.00 0.14 8.14 -2.39 -0.02 0.12 15 10 C -0.52 -23.53 8.55 25.60 0.22 -23.31 15 11 H 0.08 3.40 7.74 -2.91 -0.02 3.38 15 12 C 0.01 0.61 5.29 84.66 0.45 1.06 15 13 N -0.92 -49.90 11.21 21.45 0.24 -49.66 15 14 Si 0.96 38.81 29.54 68.60 2.03 40.83 15 15 H -0.28 -11.23 7.11 99.48 0.71 -10.52 15 16 H -0.30 -12.43 7.11 99.48 0.71 -11.73 15 17 H -0.26 -9.63 7.11 99.48 0.71 -8.93 15 18 C -0.14 -6.42 5.23 30.35 0.16 -6.26 15 19 C 0.44 20.56 7.10 28.57 0.20 20.76 15 20 O -0.50 -27.06 17.99 -3.13 -0.06 -27.11 15 21 H 0.12 0.97 8.14 -2.39 -0.02 0.95 15 22 H 0.11 1.16 8.14 -2.39 -0.02 1.14 15 23 H 0.13 1.01 7.72 -2.39 -0.02 1.00 15 24 H 0.12 3.02 8.13 -2.39 -0.02 3.00 15 25 H 0.11 2.69 7.81 -2.39 -0.02 2.67 15 26 H 0.26 13.77 8.31 -92.71 -0.77 13.00 15 27 H 0.10 3.96 8.14 -2.39 -0.02 3.94 15 28 H 0.10 5.13 5.86 -2.39 -0.01 5.12 15 Total: -1.00 -68.51 247.25 5.08 -63.43 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.18 Total: 3.14 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 3.21 Total: -5.98 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -1.28 Total: -74.31 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.83 kcal Total: -68.51 5.08 -63.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691825.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.429 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds