Wall clock time and date at job start Mon Mar 30 2020 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40547 * 126.58736 * 2 1 4 4 N 1.29205 * 108.77563 * 180.02562 * 3 2 1 5 5 C 1.33239 * 109.24772 * 0.03336 * 4 3 2 6 6 C 1.33622 * 126.58483 * 179.97438 * 2 1 3 7 7 C 1.50449 * 129.88007 * 359.84103 * 6 2 1 8 8 C 1.53191 * 109.26825 * 200.31261 * 7 6 2 9 9 H 1.09001 * 109.25992 * 67.95544 * 8 7 6 10 10 C 1.50697 * 109.25991 * 187.43399 * 8 7 6 11 11 H 1.08003 * 120.00002 * 0.02562 * 10 8 7 12 12 C 1.37881 * 119.99725 * 180.02562 * 10 8 7 13 13 N 1.31509 * 120.00455 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99717 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47130 * 359.97438 * 14 12 10 16 16 H 1.48488 * 109.47389 * 120.00023 * 14 12 10 17 17 H 1.48498 * 109.46725 * 240.00173 * 14 12 10 18 18 C 1.53617 * 110.41905 * 307.54569 * 8 7 6 19 19 C 1.47514 * 130.35843 * 179.84851 * 5 4 3 20 20 O 1.21313 * 122.38425 * 11.69594 * 19 5 4 21 21 H 1.09009 * 109.46619 * 270.04268 * 1 2 3 22 22 H 1.08992 * 109.47181 * 30.03593 * 1 2 3 23 23 H 1.09001 * 109.47355 * 150.04150 * 1 2 3 24 24 H 1.08996 * 109.51041 * 320.25231 * 7 6 2 25 25 H 1.09008 * 109.50623 * 80.33743 * 7 6 2 26 26 H 0.96995 * 120.00280 * 179.97438 * 13 12 10 27 27 H 1.08998 * 109.81224 * 305.34520 * 18 8 7 28 28 H 1.08999 * 109.65519 * 184.61553 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3027 1.1285 0.0000 4 7 3.5328 0.7333 -0.0005 5 6 3.5662 -0.5987 -0.0016 6 6 2.2614 -1.0729 0.0005 7 6 1.9093 -2.5356 0.0043 8 6 3.1106 -3.3435 0.5054 9 1 3.2742 -3.1271 1.5611 10 6 2.8257 -4.8137 0.3378 11 1 1.8850 -5.1370 -0.0831 12 6 3.7659 -5.7463 0.7217 13 7 4.9116 -5.3527 1.2337 14 14 3.4130 -7.5688 0.5133 15 1 2.0641 -7.7470 -0.0817 16 1 4.4330 -8.1713 -0.3821 17 1 3.4611 -8.2369 1.8386 18 6 4.3717 -2.9792 -0.2926 19 6 4.7138 -1.5255 -0.0056 20 8 5.8502 -1.1533 0.1992 21 1 -0.3633 0.0008 1.0278 22 1 -0.3633 0.8896 -0.5144 23 1 -0.3634 -0.8904 -0.5132 24 1 1.0575 -2.7033 0.6635 25 1 1.6541 -2.8513 -1.0074 26 1 5.5728 -6.0087 1.5041 27 1 4.1847 -3.1087 -1.3585 28 1 5.1988 -3.6179 0.0174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691831.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:44 Heat of formation + Delta-G solvation = 26.945567 kcal Electronic energy + Delta-G solvation = -14853.825405 eV Core-core repulsion = 12291.818738 eV Total energy + Delta-G solvation = -2562.006667 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.27820 -39.94073 -37.35633 -35.64551 -34.11769 -30.94736 -29.72467 -28.50043 -27.08920 -24.08084 -23.09891 -21.77160 -20.08538 -18.58094 -17.94739 -17.18603 -16.70704 -16.41390 -15.65850 -15.46272 -15.19038 -14.73337 -14.19039 -14.04026 -13.95015 -13.45758 -13.02845 -12.86071 -12.38210 -12.31851 -12.16846 -11.96546 -11.46498 -11.31068 -11.10663 -10.59567 -10.40377 -10.00317 -8.06970 -6.23257 0.09284 0.41609 1.18941 1.51376 1.55696 1.64655 1.95905 2.48850 2.90680 3.24454 3.41492 3.58203 3.71662 4.27687 4.37524 4.45160 4.48999 4.66554 4.69334 4.76072 4.87612 4.93909 5.18718 5.51027 5.62934 5.76754 5.97001 6.24466 6.52096 6.89769 7.00313 7.48405 8.98218 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037757 B = 0.009077 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.408985 B = 3084.113900 C = 3738.537616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.339 5.339 3 N -0.115 5.115 4 N -0.223 5.223 5 C -0.168 4.168 6 C 0.136 3.864 7 C -0.039 4.039 8 C 0.058 3.942 9 H 0.003 0.997 10 C -0.521 4.521 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.921 5.921 14 Si 0.958 3.042 15 H -0.253 1.253 16 H -0.289 1.289 17 H -0.291 1.291 18 C -0.142 4.142 19 C 0.436 3.564 20 O -0.505 6.505 21 H 0.108 0.892 22 H 0.116 0.884 23 H 0.129 0.871 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.261 0.739 27 H 0.099 0.901 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 3.244 -3.903 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.121 5.121 3 N -0.094 5.094 4 N -0.092 5.092 5 C -0.309 4.309 6 C -0.007 4.007 7 C -0.078 4.078 8 C 0.039 3.961 9 H 0.021 0.979 10 C -0.558 4.558 11 H 0.102 0.898 12 C -0.187 4.187 13 N -0.560 5.560 14 Si 0.785 3.215 15 H -0.177 1.177 16 H -0.215 1.215 17 H -0.217 1.217 18 C -0.181 4.181 19 C 0.315 3.685 20 O -0.380 6.380 21 H 0.127 0.873 22 H 0.135 0.865 23 H 0.147 0.853 24 H 0.132 0.868 25 H 0.140 0.860 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.711 4.993 -3.725 14.155 hybrid contribution 0.446 -1.639 0.262 1.719 sum -12.265 3.353 -3.463 13.178 Atomic orbital electron populations 1.22794 0.69252 1.08043 1.06766 1.50259 1.10536 1.04299 1.47029 1.82042 0.93227 1.06920 1.27194 1.74219 1.13528 1.11856 1.09622 1.22741 0.96814 0.90608 1.20764 1.23204 0.89708 0.93986 0.93794 1.20693 1.00903 0.80868 1.05343 1.18682 0.88648 0.94778 0.93996 0.97864 1.21459 1.02879 0.90008 1.41493 0.89765 1.25801 0.94882 1.03382 0.94632 1.70002 1.07911 1.35293 1.42811 0.85490 0.78767 0.80054 0.77214 1.17687 1.21547 1.21726 1.22545 1.04600 0.88729 1.02199 1.23120 0.84946 0.91282 0.69177 1.90427 1.25360 1.82384 1.39874 0.87322 0.86507 0.85255 0.86777 0.85955 0.92933 0.88256 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 11.40 127.77 1.46 2.36 15 2 N -0.34 -9.36 4.01 -354.39 -1.42 -10.78 15 3 N -0.12 -4.15 13.78 37.02 0.51 -3.64 15 4 N -0.22 -9.62 12.38 -49.27 -0.61 -10.23 15 5 C -0.17 -7.07 7.20 41.52 0.30 -6.77 15 6 C 0.14 4.44 6.88 42.35 0.29 4.73 15 7 C -0.04 -1.16 5.18 29.83 0.15 -1.00 15 8 C 0.06 2.46 2.06 -11.27 -0.02 2.44 15 9 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 10 C -0.52 -23.45 8.55 25.60 0.22 -23.23 15 11 H 0.08 3.42 7.74 -2.91 -0.02 3.39 15 12 C 0.01 0.60 5.29 84.66 0.45 1.05 15 13 N -0.92 -49.93 11.22 21.45 0.24 -49.69 15 14 Si 0.96 38.82 29.54 68.60 2.03 40.85 15 15 H -0.25 -9.41 7.11 99.48 0.71 -8.70 15 16 H -0.29 -11.93 7.11 99.48 0.71 -11.22 15 17 H -0.29 -12.04 7.11 99.48 0.71 -11.33 15 18 C -0.14 -6.39 5.25 30.50 0.16 -6.23 15 19 C 0.44 20.53 7.09 28.58 0.20 20.74 15 20 O -0.50 -27.07 17.99 -3.13 -0.06 -27.12 15 21 H 0.11 1.06 8.14 -2.38 -0.02 1.04 15 22 H 0.12 1.13 8.14 -2.39 -0.02 1.11 15 23 H 0.13 0.94 8.03 -2.39 -0.02 0.92 15 24 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 25 H 0.12 3.00 8.13 -2.38 -0.02 2.98 15 26 H 0.26 13.73 8.31 -92.71 -0.77 12.96 15 27 H 0.10 3.98 8.14 -2.39 -0.02 3.96 15 28 H 0.10 5.07 5.89 -2.39 -0.01 5.06 15 Total: -1.00 -68.62 247.93 5.08 -63.54 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 1.18 Total: 2.98 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 3.21 Total: -5.91 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -1.28 Total: -74.33 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.12 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -68.62 5.08 -63.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691831.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.487 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds