Wall clock time and date at job start Mon Mar 30 2020 04:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21302 * 119.99660 * 2 1 4 4 N 1.34779 * 120.00156 * 179.97438 * 2 1 3 5 5 C 1.46743 * 125.17601 * 5.08056 * 4 2 1 6 6 C 1.53889 * 104.54261 * 179.61542 * 5 4 2 7 7 C 1.51283 * 104.31149 * 0.41356 * 6 5 4 8 8 N 1.34455 * 142.53900 * 179.35698 * 7 6 5 9 9 C 1.30343 * 109.42540 * 180.02562 * 8 7 6 10 10 N 1.36435 * 108.62891 * 0.02562 * 9 8 7 11 11 C 1.37574 * 126.51479 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00155 * 149.22922 * 11 10 9 13 13 C 1.38923 * 120.00191 * 328.95695 * 11 10 9 14 14 N 1.31351 * 119.99851 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00404 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47192 * 90.00041 * 15 13 11 17 17 H 1.48500 * 109.47310 * 210.00133 * 15 13 11 18 18 H 1.48509 * 109.46986 * 330.00068 * 15 13 11 19 19 C 1.34797 * 108.89584 * 359.66013 * 7 6 5 20 20 H 1.09001 * 109.47546 * 239.99768 * 1 2 3 21 21 H 1.08998 * 109.47200 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46644 * 119.99843 * 1 2 3 23 23 H 1.09003 * 110.41618 * 298.74288 * 5 4 2 24 24 H 1.08996 * 110.41875 * 61.09387 * 5 4 2 25 25 H 1.08998 * 110.98273 * 241.44715 * 6 5 4 26 26 H 1.08998 * 109.94224 * 118.86928 * 6 5 4 27 27 H 1.08000 * 125.68495 * 180.02562 * 9 8 7 28 28 H 0.96998 * 120.00245 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5690 -2.4967 -0.1051 6 6 2.7576 -3.4734 -0.0666 7 6 3.9709 -2.5805 0.0718 8 7 5.3108 -2.6097 0.1806 9 6 5.7650 -1.3914 0.2713 10 7 4.7097 -0.5281 0.2230 11 6 4.7714 0.8447 0.2889 12 1 4.0346 1.4438 -0.2255 13 6 5.7782 1.4604 1.0219 14 7 6.6709 0.7318 1.6525 15 14 5.8625 3.3244 1.1109 16 1 5.0678 3.8010 2.2712 17 1 7.2765 3.7489 1.2714 18 1 5.3102 3.9051 -0.1394 19 6 3.5660 -1.2951 0.1011 20 1 -0.3634 -0.5139 0.8899 21 1 -0.3633 1.0276 -0.0005 22 1 -0.3633 -0.5138 -0.8901 23 1 0.8968 -2.6737 0.7346 24 1 1.0318 -2.5943 -1.0485 25 1 2.8152 -4.0546 -0.9869 26 1 2.6691 -4.1328 0.7968 27 1 6.8037 -1.1119 0.3685 28 1 7.3741 1.1617 2.1639 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259755930.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:22 Heat of formation + Delta-G solvation = 46.082918 kcal Electronic energy + Delta-G solvation = -15206.998332 eV Core-core repulsion = 12645.821522 eV Total energy + Delta-G solvation = -2561.176809 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02657 -38.67764 -36.28928 -33.65565 -31.32489 -30.48563 -28.96892 -26.80645 -24.98943 -22.58385 -21.21980 -19.40067 -18.81860 -17.12692 -16.02394 -15.82978 -15.37496 -14.66516 -14.07296 -13.98934 -13.24514 -13.18558 -12.70332 -12.29263 -12.05579 -11.98162 -11.58330 -11.45794 -11.18138 -11.10984 -10.83475 -10.39059 -9.50722 -9.34891 -9.26967 -8.44803 -8.06765 -6.68437 -6.29110 -4.35615 2.81691 3.10946 3.12952 3.17596 3.26691 3.82016 3.99894 4.41917 4.69398 5.01057 5.14071 5.23408 5.26039 5.35174 5.42881 5.61626 5.73536 5.95560 6.20120 6.36655 6.81098 6.91163 7.04195 7.30310 7.38508 8.04939 8.21755 8.48908 8.80388 8.90049 9.48785 9.68500 10.41955 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.028508 B = 0.012928 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.932947 B = 2165.371436 C = 3072.525282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.496 3.504 3 O -0.517 6.517 4 N -0.519 5.519 5 C 0.121 3.879 6 C -0.026 4.026 7 C -0.085 4.085 8 N -0.506 5.506 9 C 0.185 3.815 10 N -0.255 5.255 11 C -0.333 4.333 12 H 0.129 0.871 13 C 0.043 3.957 14 N -0.858 5.858 15 Si 0.945 3.055 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.264 1.264 19 C 0.118 3.882 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.206 0.794 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 -3.051 -2.242 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.285 3.715 3 O -0.392 6.392 4 N -0.249 5.249 5 C -0.003 4.003 6 C -0.065 4.065 7 C -0.221 4.221 8 N -0.227 5.227 9 C -0.094 4.094 10 N 0.077 4.923 11 C -0.462 4.462 12 H 0.147 0.853 13 C -0.165 4.165 14 N -0.491 5.491 15 Si 0.770 3.230 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.095 4.095 20 H 0.103 0.897 21 H 0.107 0.893 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.222 0.778 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.105 -2.867 -2.092 9.772 hybrid contribution -0.437 1.689 0.296 1.770 sum -9.542 -1.178 -1.796 9.781 Atomic orbital electron populations 1.21850 0.91770 1.04949 1.03681 1.20711 0.90256 0.82992 0.77532 1.90749 1.69698 1.30456 1.48271 1.45038 1.02972 1.06469 1.70382 1.22096 0.96249 0.80509 1.01398 1.20176 0.88779 0.95456 1.02077 1.20179 0.92137 0.91451 1.18293 1.69464 1.07177 1.22604 1.23434 1.24806 0.94188 0.81772 1.08683 1.41229 1.01954 1.06427 1.42686 1.20663 1.14738 0.78894 1.31882 0.85335 1.25651 0.95143 1.01842 0.93860 1.69840 1.13921 1.36781 1.28517 0.85634 0.77513 0.80372 0.79493 1.19838 1.20365 1.18825 1.18147 0.81378 0.91967 1.18037 0.89748 0.89267 0.89849 0.90550 0.90690 0.90630 0.90766 0.77757 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.49 36.01 0.34 -1.72 15 2 C 0.50 9.99 7.90 -10.98 -0.09 9.90 15 3 O -0.52 -12.99 13.83 5.54 0.08 -12.91 15 4 N -0.52 -10.76 3.13 -114.24 -0.36 -11.12 15 5 C 0.12 1.76 6.75 -3.45 -0.02 1.73 15 6 C -0.03 -0.44 6.96 -27.13 -0.19 -0.63 15 7 C -0.09 -2.07 8.07 -82.38 -0.67 -2.73 15 8 N -0.51 -13.52 11.25 -10.30 -0.12 -13.64 15 9 C 0.18 5.15 11.18 -89.22 -1.00 4.16 15 10 N -0.25 -7.30 2.93 -62.14 -0.18 -7.49 15 11 C -0.33 -9.65 9.08 -14.72 -0.13 -9.79 15 12 H 0.13 3.84 5.33 -52.48 -0.28 3.56 15 13 C 0.04 1.18 5.44 -17.50 -0.10 1.08 15 14 N -0.86 -23.68 11.18 55.49 0.62 -23.06 15 15 Si 0.95 21.29 29.55 -169.99 -5.02 16.27 15 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 18 H -0.26 -5.91 7.11 56.52 0.40 -5.51 15 19 C 0.12 3.04 7.69 -150.88 -1.16 1.88 15 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.09 1.08 8.12 -51.93 -0.42 0.66 15 22 H 0.08 0.83 8.14 -51.93 -0.42 0.40 15 23 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.21 5.63 6.80 -52.49 -0.36 5.27 15 28 H 0.28 7.09 8.31 -40.82 -0.34 6.75 15 LS Contribution 243.15 15.07 3.66 3.66 Total: -1.00 -34.79 243.15 -7.06 -41.84 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -2.73 Total: 2.55 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -3.01 Total: 3.88 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.03 Total: -55.30 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -34.79 -7.06 -41.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755930.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.926 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds