Wall clock time and date at job start Mon Mar 30 2020 04:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21302 * 119.99660 * 2 1 4 4 N 1.34779 * 120.00156 * 179.97438 * 2 1 3 5 5 C 1.46743 * 125.17601 * 5.08056 * 4 2 1 6 6 C 1.53889 * 104.54261 * 179.61542 * 5 4 2 7 7 C 1.51283 * 104.31149 * 0.41356 * 6 5 4 8 8 N 1.34455 * 142.53900 * 179.35698 * 7 6 5 9 9 C 1.30343 * 109.42540 * 180.02562 * 8 7 6 10 10 N 1.36435 * 108.62891 * 0.02562 * 9 8 7 11 11 C 1.37574 * 126.51479 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00155 * 149.22922 * 11 10 9 13 13 C 1.38923 * 120.00191 * 328.95695 * 11 10 9 14 14 N 1.31351 * 119.99851 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00404 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47192 * 90.00041 * 15 13 11 17 17 H 1.48500 * 109.47310 * 210.00133 * 15 13 11 18 18 H 1.48509 * 109.46986 * 330.00068 * 15 13 11 19 19 C 1.34797 * 108.89584 * 359.66013 * 7 6 5 20 20 H 1.09001 * 109.47546 * 239.99768 * 1 2 3 21 21 H 1.08998 * 109.47200 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46644 * 119.99843 * 1 2 3 23 23 H 1.09003 * 110.41618 * 298.74288 * 5 4 2 24 24 H 1.08996 * 110.41875 * 61.09387 * 5 4 2 25 25 H 1.08998 * 110.98273 * 241.44715 * 6 5 4 26 26 H 1.08998 * 109.94224 * 118.86928 * 6 5 4 27 27 H 1.08000 * 125.68495 * 180.02562 * 9 8 7 28 28 H 0.96998 * 120.00245 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5690 -2.4967 -0.1051 6 6 2.7576 -3.4734 -0.0666 7 6 3.9709 -2.5805 0.0718 8 7 5.3108 -2.6097 0.1806 9 6 5.7650 -1.3914 0.2713 10 7 4.7097 -0.5281 0.2230 11 6 4.7714 0.8447 0.2889 12 1 4.0346 1.4438 -0.2255 13 6 5.7782 1.4604 1.0219 14 7 6.6709 0.7318 1.6525 15 14 5.8625 3.3244 1.1109 16 1 5.0678 3.8010 2.2712 17 1 7.2765 3.7489 1.2714 18 1 5.3102 3.9051 -0.1394 19 6 3.5660 -1.2951 0.1011 20 1 -0.3634 -0.5139 0.8899 21 1 -0.3633 1.0276 -0.0005 22 1 -0.3633 -0.5138 -0.8901 23 1 0.8968 -2.6737 0.7346 24 1 1.0318 -2.5943 -1.0485 25 1 2.8152 -4.0546 -0.9869 26 1 2.6691 -4.1328 0.7968 27 1 6.8037 -1.1119 0.3685 28 1 7.3741 1.1617 2.1639 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259755930.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:22 Heat of formation + Delta-G solvation = 22.827729 kcal Electronic energy + Delta-G solvation = -15208.006752 eV Core-core repulsion = 12645.821522 eV Total energy + Delta-G solvation = -2562.185230 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.86792 -40.31851 -37.91006 -35.66885 -33.19498 -32.04779 -30.30919 -28.45347 -27.03353 -24.00082 -23.04831 -21.26087 -20.64721 -18.76073 -17.95229 -17.31526 -16.89882 -16.52108 -15.89101 -15.56338 -14.90412 -14.76916 -14.47781 -13.88041 -13.32866 -13.12437 -13.06882 -12.99483 -12.93746 -12.81244 -12.64512 -12.14292 -11.44870 -11.00004 -10.96106 -10.42356 -10.08116 -8.72698 -8.12344 -6.50910 1.08933 1.26775 1.39666 1.42931 1.71446 2.03328 2.14667 2.47813 2.90247 3.10453 3.53642 3.89675 3.93770 4.35787 4.47502 4.62463 4.70189 4.72099 5.03932 5.05102 5.11497 5.20017 5.21487 5.34200 5.41945 6.18960 6.43041 6.55625 6.83914 7.25539 7.44416 7.66986 8.38210 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.028508 B = 0.012928 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.932947 B = 2165.371436 C = 3072.525282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.480 3.520 3 O -0.582 6.582 4 N -0.525 5.525 5 C 0.117 3.883 6 C -0.024 4.024 7 C -0.095 4.095 8 N -0.522 5.522 9 C 0.156 3.844 10 N -0.278 5.278 11 C -0.365 4.365 12 H 0.114 0.886 13 C 0.002 3.998 14 N -0.883 5.883 15 Si 1.013 2.987 16 H -0.271 1.271 17 H -0.257 1.257 18 H -0.265 1.265 19 C 0.088 3.912 20 H 0.116 0.884 21 H 0.091 0.909 22 H 0.122 0.878 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.194 0.806 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.880 -3.816 -2.335 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.272 3.728 3 O -0.461 6.461 4 N -0.255 5.255 5 C -0.003 4.003 6 C -0.063 4.063 7 C -0.230 4.230 8 N -0.243 5.243 9 C -0.122 4.122 10 N 0.052 4.948 11 C -0.493 4.493 12 H 0.131 0.869 13 C -0.203 4.203 14 N -0.516 5.516 15 Si 0.833 3.167 16 H -0.196 1.196 17 H -0.181 1.181 18 H -0.190 1.190 19 C -0.125 4.125 20 H 0.134 0.866 21 H 0.109 0.891 22 H 0.140 0.860 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.211 0.789 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.938 -3.693 -2.190 12.687 hybrid contribution 0.385 1.802 0.307 1.868 sum -11.553 -1.891 -1.884 11.858 Atomic orbital electron populations 1.21873 0.85234 1.06311 1.06908 1.22228 0.93177 0.81808 0.75551 1.90714 1.71623 1.32802 1.51000 1.45603 1.00815 1.09138 1.69955 1.22638 0.95588 0.76470 1.05596 1.20522 0.85799 0.95546 1.04387 1.21484 0.92341 0.93373 1.15815 1.69448 1.09146 1.21875 1.23867 1.24673 0.94210 0.82641 1.10699 1.41421 1.03335 1.06554 1.43482 1.20723 1.15558 0.79541 1.33491 0.86886 1.26613 0.94202 1.06564 0.92930 1.69920 1.14322 1.38639 1.28766 0.84683 0.78494 0.74368 0.79176 1.19624 1.18066 1.18959 1.19009 0.83620 0.92309 1.17550 0.86584 0.89052 0.86009 0.86390 0.86353 0.88074 0.88540 0.78937 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.49 71.24 0.68 -2.34 15 2 C 0.48 18.61 7.90 87.66 0.69 19.30 15 3 O -0.58 -29.90 13.83 -3.10 -0.04 -29.95 15 4 N -0.53 -20.74 3.13 -633.73 -1.98 -22.72 15 5 C 0.12 2.82 6.75 86.63 0.58 3.40 15 6 C -0.02 -0.73 6.96 30.33 0.21 -0.52 15 7 C -0.09 -4.53 8.07 41.55 0.34 -4.20 15 8 N -0.52 -28.59 11.25 -186.49 -2.10 -30.69 15 9 C 0.16 9.17 11.18 179.86 2.01 11.18 15 10 N -0.28 -16.65 2.93 -350.52 -1.03 -17.68 15 11 C -0.36 -22.17 9.08 83.96 0.76 -21.41 15 12 H 0.11 7.13 5.33 -2.91 -0.02 7.11 15 13 C 0.00 0.12 5.44 84.93 0.46 0.58 15 14 N -0.88 -50.56 11.18 21.65 0.24 -50.32 15 15 Si 1.01 44.73 29.55 68.60 2.03 46.76 15 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 17 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 15 19 C 0.09 4.58 7.69 130.07 1.00 5.58 15 20 H 0.12 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.09 1.91 8.12 -2.39 -0.02 1.89 15 22 H 0.12 1.66 8.14 -2.38 -0.02 1.64 15 23 H 0.12 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.12 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.10 2.54 8.14 -2.39 -0.02 2.52 15 26 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 27 H 0.19 11.38 6.80 -2.91 -0.02 11.36 15 28 H 0.29 14.93 8.31 -92.71 -0.77 14.16 15 Total: -1.00 -83.07 243.15 5.04 -78.03 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.18 Total: 14.99 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.73 Total: 11.57 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -4.86 Total: -121.41 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.04 Total: -29.95 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -83.07 5.04 -78.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755930.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.859 kcal (2) G-P(sol) polarization free energy of solvation -83.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds