Wall clock time and date at job start Mon Mar 30 2020 03:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47254 * 270.00354 * 3 2 1 5 5 H 1.48503 * 109.46914 * 30.00832 * 3 2 1 6 6 H 1.48501 * 109.46972 * 150.00344 * 3 2 1 7 7 C 1.37879 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99732 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00260 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47053 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47142 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00195 * 180.02562 * 11 10 9 13 13 O 1.21509 * 119.99692 * 359.97438 * 12 11 10 14 14 C 1.48146 * 120.00046 * 180.02562 * 12 11 10 15 15 C 1.39726 * 120.18431 * 180.27731 * 14 12 11 16 16 C 1.38818 * 117.90032 * 180.21582 * 15 14 12 17 17 C 1.38574 * 118.06807 * 359.50901 * 16 15 14 18 18 N 1.32168 * 120.06951 * 0.25594 * 17 16 15 19 19 N 1.28357 * 122.29793 * 359.97438 * 18 17 16 20 20 H 0.97001 * 120.00295 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46627 * 60.00446 * 9 7 2 22 22 H 1.08994 * 109.47403 * 300.00242 * 9 7 2 23 23 H 1.08998 * 109.47169 * 60.00428 * 10 9 7 24 24 H 1.09003 * 109.47080 * 300.00096 * 10 9 7 25 25 H 0.97007 * 119.99807 * 359.97438 * 11 10 9 26 26 H 1.08001 * 121.04448 * 359.97438 * 15 14 12 27 27 H 1.08002 * 120.96828 * 179.79196 * 16 15 14 28 28 H 1.08004 * 119.96768 * 180.27433 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4865 -2.6365 -0.0009 12 6 6.1604 -3.8037 -0.0014 13 8 5.5529 -4.8560 -0.0013 14 6 7.6419 -3.8037 -0.0007 15 6 8.3445 -5.0114 -0.0070 16 6 9.7315 -4.9561 -0.0015 17 6 10.3343 -3.7083 -0.0006 18 7 9.5924 -2.6145 0.0002 19 7 8.3095 -2.6559 -0.0003 20 1 -0.4850 0.8400 0.0004 21 1 3.8751 -0.6804 0.8890 22 1 3.8745 -0.6800 -0.8910 23 1 3.6579 -3.1505 -0.8907 24 1 3.6585 -3.1502 0.8893 25 1 5.9715 -1.7964 -0.0014 26 1 7.8247 -5.9581 -0.0120 27 1 10.3237 -5.8593 -0.0026 28 1 11.4114 -3.6295 -0.0009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810191.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:12 Heat of formation + Delta-G solvation = -10.202345 kcal Electronic energy + Delta-G solvation = -13889.805027 eV Core-core repulsion = 11326.187506 eV Total energy + Delta-G solvation = -2563.617521 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20869 -40.44675 -36.79944 -34.91756 -34.18568 -33.83053 -31.92000 -27.57825 -25.89698 -25.45298 -22.77336 -22.16783 -19.48844 -18.97325 -18.32700 -17.59449 -16.88584 -16.74399 -16.21338 -15.87200 -15.66499 -14.85144 -14.83242 -14.56432 -14.14042 -13.38966 -13.08463 -12.62763 -12.27255 -12.20824 -11.78526 -11.54148 -11.32380 -11.21528 -11.20781 -10.86067 -10.79799 -10.18226 -8.31091 -6.37956 -0.60580 -0.26079 1.39070 1.40645 1.52357 1.54709 1.93133 2.35922 2.58281 2.79863 3.03934 3.42466 3.61959 3.78368 3.93114 4.14767 4.29154 4.38338 4.71804 4.76304 4.87017 5.04127 5.16546 5.33274 5.36636 5.59344 6.19860 6.36355 6.68883 6.95919 7.26651 7.48057 8.85256 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.050698 B = 0.005554 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.160526 B = 5040.176435 C = 5571.889294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.242 1.242 7 C -0.537 4.537 8 H 0.035 0.965 9 C -0.015 4.015 10 C 0.142 3.858 11 N -0.698 5.698 12 C 0.566 3.434 13 O -0.565 6.565 14 C 0.010 3.990 15 C -0.077 4.077 16 C -0.094 4.094 17 C 0.060 3.940 18 N -0.274 5.274 19 N -0.239 5.239 20 H 0.268 0.732 21 H 0.035 0.965 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.416 0.584 26 H 0.171 0.829 27 H 0.209 0.791 28 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.629 -7.905 0.007 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.165 1.165 7 C -0.576 4.576 8 H 0.053 0.947 9 C -0.053 4.053 10 C 0.019 3.981 11 N -0.348 5.348 12 C 0.350 3.650 13 O -0.444 6.444 14 C -0.137 4.137 15 C -0.106 4.106 16 C -0.123 4.123 17 C -0.103 4.103 18 N -0.117 5.117 19 N -0.085 5.085 20 H 0.077 0.923 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.253 0.747 26 H 0.188 0.812 27 H 0.226 0.774 28 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 23.931 -6.867 0.011 24.897 hybrid contribution -0.356 -0.468 -0.024 0.589 sum 23.575 -7.335 -0.012 24.690 Atomic orbital electron populations 1.70054 1.08385 1.28411 1.51890 1.26002 0.95661 1.03615 0.93718 0.85608 0.79611 0.77791 0.79340 1.19036 1.20989 1.16494 1.21208 0.91210 0.93574 1.51561 0.94698 1.19672 0.94754 0.92863 0.98030 1.21214 0.77169 0.98837 1.00907 1.46054 1.08037 1.09025 1.71688 1.18033 0.86160 0.83986 0.76790 1.90761 1.69507 1.32087 1.52046 1.22669 0.94985 0.93606 1.02451 1.22714 0.96107 0.99072 0.92663 1.23012 0.93570 1.01685 0.94038 1.25295 1.04607 0.89159 0.91201 1.73078 0.98513 1.29558 1.10534 1.73173 1.03276 1.24601 1.07477 0.92275 0.94712 0.94837 0.92653 0.92668 0.74689 0.81172 0.77397 0.76075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 13.96 21.45 0.30 -59.14 15 2 C 0.01 0.44 5.47 84.66 0.46 0.90 15 3 Si 0.95 43.60 27.47 68.60 1.88 45.48 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 15 6 H -0.24 -10.10 6.54 99.48 0.65 -9.45 15 7 C -0.54 -31.03 9.66 25.60 0.25 -30.79 15 8 H 0.03 2.23 7.99 -2.91 -0.02 2.20 15 9 C -0.02 -0.71 4.16 29.85 0.12 -0.59 15 10 C 0.14 5.96 5.61 86.38 0.48 6.44 15 11 N -0.70 -24.73 5.55 -465.68 -2.58 -27.31 15 12 C 0.57 19.37 7.82 86.88 0.68 20.05 15 13 O -0.57 -22.28 16.39 -3.75 -0.06 -22.34 15 14 C 0.01 0.26 6.83 41.99 0.29 0.54 15 15 C -0.08 -1.41 9.73 22.77 0.22 -1.18 15 16 C -0.09 -0.91 10.20 22.49 0.23 -0.68 15 17 C 0.06 0.72 11.31 84.72 0.96 1.68 15 18 N -0.27 -6.22 11.51 -57.15 -0.66 -6.88 15 19 N -0.24 -6.59 10.75 -48.49 -0.52 -7.12 15 20 H 0.27 15.63 8.31 -92.71 -0.77 14.86 15 21 H 0.03 1.54 7.20 -2.38 -0.02 1.53 15 22 H 0.03 1.47 7.57 -2.39 -0.02 1.45 15 23 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 24 H 0.05 2.43 8.14 -2.39 -0.02 2.41 15 25 H 0.42 13.39 7.83 -92.70 -0.73 12.66 15 26 H 0.17 2.79 7.72 -2.91 -0.02 2.77 15 27 H 0.21 -0.13 8.06 -2.91 -0.02 -0.16 15 28 H 0.22 0.49 8.06 -2.91 -0.02 0.47 15 Total: -1.00 -75.24 256.18 2.46 -72.78 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.40 Total: 8.13 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 3.69 Total: -3.62 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -3.46 Total: -100.44 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -75.24 2.46 -72.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810191.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.581 kcal (2) G-P(sol) polarization free energy of solvation -75.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds