Wall clock time and date at job start Mon Mar 30 2020 04:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47461 * 2 1 4 4 C 1.50702 * 109.47619 * 239.99582 * 2 1 3 5 5 H 1.08000 * 119.99489 * 240.00382 * 4 2 1 6 6 C 1.37872 * 120.00069 * 59.99474 * 4 2 1 7 7 N 1.31515 * 119.99669 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00043 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46780 * 60.00860 * 8 6 4 10 10 H 1.48501 * 109.46823 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47336 * 300.00781 * 8 6 4 12 12 N 1.46504 * 109.47183 * 119.99175 * 2 1 3 13 13 C 1.34775 * 120.00360 * 275.00866 * 12 2 1 14 14 O 1.21518 * 119.99720 * 359.97438 * 13 12 2 15 15 C 1.48154 * 120.00194 * 179.97438 * 13 12 2 16 16 C 1.39717 * 120.18152 * 179.97438 * 15 13 12 17 17 C 1.38829 * 117.89527 * 180.02562 * 16 15 13 18 18 C 1.38568 * 118.06736 * 0.27849 * 17 16 15 19 19 N 1.32167 * 120.07069 * 359.43036 * 18 17 16 20 20 N 1.28357 * 122.30132 * 0.59212 * 19 18 17 21 21 H 1.08994 * 109.47200 * 300.00252 * 1 2 3 22 22 H 1.08999 * 109.46950 * 60.00745 * 1 2 3 23 23 H 1.09001 * 109.46726 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99387 * 179.97438 * 7 6 4 25 25 H 0.97003 * 119.99627 * 94.99929 * 12 2 1 26 26 H 1.07993 * 121.05288 * 0.04003 * 16 15 13 27 27 H 1.08002 * 120.96089 * 179.97438 * 17 16 15 28 28 H 1.08005 * 119.96418 * 179.72296 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9436 0.8299 -2.6034 8 14 2.3228 -1.1199 -4.0078 9 1 1.8283 -2.5201 -4.0079 10 1 1.8281 -0.4197 -5.2203 11 1 3.8078 -1.1193 -4.0074 12 7 2.0184 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8582 1.1611 2.4116 15 6 2.6403 -0.7165 3.5671 16 6 2.7755 -0.0229 4.7724 17 6 3.2425 -0.7237 5.8762 18 6 3.5511 -2.0648 5.7142 19 7 3.3878 -2.6445 4.5377 20 7 2.9568 -2.0048 3.5118 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7096 1.1613 -3.4845 25 1 2.2490 -1.6316 1.1528 26 1 2.5246 1.0250 4.8433 27 1 3.3663 -0.2364 6.8320 28 1 3.9211 -2.6382 6.5514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260011125.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:11 Heat of formation + Delta-G solvation = 17.757481 kcal Electronic energy + Delta-G solvation = -14319.275620 eV Core-core repulsion = 11756.870527 eV Total energy + Delta-G solvation = -2562.405092 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04444 -38.68079 -34.94299 -33.27012 -32.81037 -32.11691 -28.92692 -25.37482 -25.14645 -24.52945 -21.60735 -19.76921 -18.26386 -17.30406 -16.81423 -15.86882 -15.29174 -15.14014 -14.56289 -14.15075 -13.80397 -13.37194 -13.02422 -12.41639 -11.75521 -11.43840 -11.11221 -10.96208 -10.78908 -10.37425 -10.35463 -10.23020 -10.02356 -9.82478 -9.38661 -9.07023 -8.55876 -7.99786 -6.12098 -4.21165 0.52665 0.70574 3.01966 3.28725 3.33001 3.35054 3.62582 3.90134 4.07108 4.35816 4.40714 4.60156 4.75359 4.96109 5.20444 5.28202 5.68405 5.82612 6.05731 6.79818 6.93446 7.10542 7.34313 7.51071 7.68798 7.87631 8.11968 8.46818 8.63793 8.72838 8.98138 9.45742 10.94065 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049177 B = 0.006555 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.231174 B = 4270.499544 C = 4655.418292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.261 3.739 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.679 5.679 13 C 0.555 3.445 14 O -0.544 6.544 15 C 0.038 3.962 16 C -0.070 4.070 17 C -0.126 4.126 18 C 0.043 3.957 19 N -0.244 5.244 20 N -0.212 5.212 21 H 0.015 0.985 22 H 0.093 0.907 23 H 0.029 0.971 24 H 0.265 0.735 25 H 0.401 0.599 26 H 0.162 0.838 27 H 0.154 0.846 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -3.386 14.378 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.325 5.325 13 C 0.336 3.664 14 O -0.422 6.422 15 C -0.108 4.108 16 C -0.100 4.100 17 C -0.155 4.155 18 C -0.120 4.120 19 N -0.087 5.087 20 N -0.058 5.058 21 H 0.034 0.966 22 H 0.111 0.889 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.236 0.764 26 H 0.179 0.821 27 H 0.172 0.828 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.327 -3.784 13.267 14.192 hybrid contribution 0.336 0.394 0.176 0.547 sum 3.663 -3.390 13.444 14.340 Atomic orbital electron populations 1.22090 0.98051 0.99431 1.01061 1.18902 0.91321 0.94088 0.79689 0.92997 1.21182 1.32609 1.13385 0.90127 0.91822 1.24877 0.94745 0.94948 0.99063 1.69893 1.35848 1.22428 1.24054 0.86465 0.79208 0.79632 0.81571 1.20049 1.21141 1.20125 1.46525 1.61965 1.14383 1.09645 1.17617 0.79731 0.86353 0.82680 1.90757 1.52022 1.14940 1.84490 1.23358 0.98008 0.92967 0.96497 1.22493 0.93334 1.02641 0.91505 1.22417 0.97479 0.95356 1.00255 1.24440 0.95785 0.93909 0.97842 1.73143 1.08682 1.30182 0.96708 1.73283 1.05284 1.06166 1.21097 0.96579 0.88852 0.95197 0.92481 0.76416 0.82051 0.82789 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 15 2 C 0.26 6.77 2.56 -69.08 -0.18 6.59 15 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 15 4 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 15 5 H 0.06 1.66 7.74 -52.49 -0.41 1.26 15 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 15 7 N -0.88 -24.97 11.32 55.43 0.63 -24.34 15 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 15 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 15 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 15 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 12 N -0.68 -15.11 5.06 -55.78 -0.28 -15.39 15 13 C 0.56 11.65 7.78 -12.19 -0.09 11.56 15 14 O -0.54 -12.77 16.06 5.35 0.09 -12.69 15 15 C 0.04 0.65 6.83 -82.83 -0.57 0.09 15 16 C -0.07 -0.91 9.73 -38.81 -0.38 -1.29 15 17 C -0.13 -1.18 10.20 -39.24 -0.40 -1.58 15 18 C 0.04 0.44 11.31 -17.29 -0.20 0.25 15 19 N -0.24 -3.59 11.51 30.58 0.35 -3.23 15 20 N -0.21 -3.61 10.75 33.32 0.36 -3.25 15 21 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 22 H 0.09 2.52 6.07 -51.93 -0.32 2.20 15 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 25 H 0.40 8.33 7.90 -40.82 -0.32 8.01 15 26 H 0.16 1.92 7.72 -52.49 -0.41 1.52 15 27 H 0.15 0.79 8.06 -52.49 -0.42 0.37 15 28 H 0.17 1.03 8.06 -52.48 -0.42 0.61 15 LS Contribution 254.96 15.07 3.84 3.84 Total: -1.00 -31.26 254.96 -4.57 -35.83 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -2.67 Total: 4.12 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.86 Total: -0.79 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 1.06 Total: -46.21 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.26 -4.57 -35.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011125.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.585 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds