Wall clock time and date at job start Mon Mar 30 2020 04:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47461 * 2 1 4 4 C 1.50702 * 109.47619 * 239.99582 * 2 1 3 5 5 H 1.08000 * 119.99489 * 240.00382 * 4 2 1 6 6 C 1.37872 * 120.00069 * 59.99474 * 4 2 1 7 7 N 1.31515 * 119.99669 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00043 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46780 * 60.00860 * 8 6 4 10 10 H 1.48501 * 109.46823 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47336 * 300.00781 * 8 6 4 12 12 N 1.46504 * 109.47183 * 119.99175 * 2 1 3 13 13 C 1.34775 * 120.00360 * 275.00866 * 12 2 1 14 14 O 1.21518 * 119.99720 * 359.97438 * 13 12 2 15 15 C 1.48154 * 120.00194 * 179.97438 * 13 12 2 16 16 C 1.39717 * 120.18152 * 179.97438 * 15 13 12 17 17 C 1.38829 * 117.89527 * 180.02562 * 16 15 13 18 18 C 1.38568 * 118.06736 * 0.27849 * 17 16 15 19 19 N 1.32167 * 120.07069 * 359.43036 * 18 17 16 20 20 N 1.28357 * 122.30132 * 0.59212 * 19 18 17 21 21 H 1.08994 * 109.47200 * 300.00252 * 1 2 3 22 22 H 1.08999 * 109.46950 * 60.00745 * 1 2 3 23 23 H 1.09001 * 109.46726 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99387 * 179.97438 * 7 6 4 25 25 H 0.97003 * 119.99627 * 94.99929 * 12 2 1 26 26 H 1.07993 * 121.05288 * 0.04003 * 16 15 13 27 27 H 1.08002 * 120.96089 * 179.97438 * 17 16 15 28 28 H 1.08005 * 119.96418 * 179.72296 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9436 0.8299 -2.6034 8 14 2.3228 -1.1199 -4.0078 9 1 1.8283 -2.5201 -4.0079 10 1 1.8281 -0.4197 -5.2203 11 1 3.8078 -1.1193 -4.0074 12 7 2.0184 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8582 1.1611 2.4116 15 6 2.6403 -0.7165 3.5671 16 6 2.7755 -0.0229 4.7724 17 6 3.2425 -0.7237 5.8762 18 6 3.5511 -2.0648 5.7142 19 7 3.3878 -2.6445 4.5377 20 7 2.9568 -2.0048 3.5118 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7096 1.1613 -3.4845 25 1 2.2490 -1.6316 1.1528 26 1 2.5246 1.0250 4.8433 27 1 3.3663 -0.2364 6.8320 28 1 3.9211 -2.6382 6.5514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260011125.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:11 Heat of formation + Delta-G solvation = -5.752621 kcal Electronic energy + Delta-G solvation = -14320.295094 eV Core-core repulsion = 11756.870527 eV Total energy + Delta-G solvation = -2563.424567 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.15162 -40.32880 -36.86198 -34.59226 -34.11845 -33.61786 -30.83274 -27.38439 -26.48694 -25.53926 -23.30893 -21.54887 -19.85019 -18.47886 -18.00505 -17.43915 -17.06791 -16.52464 -16.27178 -15.47756 -15.27597 -14.74940 -14.43681 -14.14610 -13.74436 -13.05140 -12.91247 -12.77667 -12.54888 -12.30288 -12.16511 -11.29768 -11.19786 -11.15105 -11.06019 -10.82514 -10.62076 -9.88621 -8.20032 -6.37565 -0.54465 -0.23506 1.44561 1.46927 1.54790 1.68472 2.15118 2.43638 2.64174 2.92278 3.10292 3.47500 3.68676 3.83810 3.97727 4.19190 4.68628 4.78647 4.88209 4.90357 5.02822 5.19527 5.35117 5.52054 5.62546 5.82263 6.04225 6.66725 6.74170 7.18597 7.36609 7.52647 8.86336 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049177 B = 0.006555 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.231174 B = 4270.499544 C = 4655.418292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.267 3.733 3 H 0.009 0.991 4 C -0.553 4.553 5 H 0.069 0.931 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.974 3.026 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.683 5.683 13 C 0.555 3.445 14 O -0.578 6.578 15 C 0.013 3.987 16 C -0.080 4.080 17 C -0.093 4.093 18 C 0.057 3.943 19 N -0.274 5.274 20 N -0.240 5.240 21 H 0.016 0.984 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.268 0.732 25 H 0.408 0.592 26 H 0.168 0.832 27 H 0.211 0.789 28 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 -4.660 16.471 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.027 0.973 4 C -0.591 4.591 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.798 3.202 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.330 5.330 13 C 0.339 3.661 14 O -0.458 6.458 15 C -0.134 4.134 16 C -0.109 4.109 17 C -0.122 4.122 18 C -0.105 4.105 19 N -0.117 5.117 20 N -0.087 5.087 21 H 0.035 0.965 22 H 0.092 0.908 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.244 0.756 26 H 0.185 0.815 27 H 0.228 0.772 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.419 -5.084 15.383 16.793 hybrid contribution 0.050 0.790 -0.266 0.835 sum 4.470 -4.295 15.117 16.338 Atomic orbital electron populations 1.21909 0.97724 0.99593 1.00066 1.18535 0.91564 0.92204 0.81264 0.97303 1.21477 1.33015 1.13724 0.90866 0.91290 1.25767 0.94731 0.95567 1.02157 1.70027 1.36692 1.23687 1.24862 0.85375 0.78644 0.78697 0.77505 1.19020 1.20702 1.19649 1.46307 1.62733 1.14594 1.09407 1.18182 0.78466 0.86057 0.83441 1.90716 1.53294 1.16470 1.85312 1.22773 1.00991 0.93717 0.95913 1.22700 0.93814 1.03168 0.91249 1.23009 0.93693 0.94596 1.00858 1.25302 0.93092 0.94764 0.97361 1.73063 1.09887 1.30754 0.97970 1.73195 1.06407 1.06108 1.22975 0.96457 0.90828 0.94280 0.92313 0.75616 0.81476 0.77234 0.75848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.33 15 2 C 0.27 14.45 2.56 44.25 0.11 14.57 15 3 H 0.01 0.56 7.58 -2.39 -0.02 0.54 15 4 C -0.55 -30.56 8.73 25.60 0.22 -30.33 15 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 15 6 C 0.02 1.00 5.30 84.65 0.45 1.45 15 7 N -0.91 -52.85 11.32 21.45 0.24 -52.61 15 8 Si 0.97 43.01 29.54 68.60 2.03 45.03 15 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 12 N -0.68 -31.65 5.06 -448.67 -2.27 -33.92 15 13 C 0.56 24.15 7.78 86.88 0.68 24.83 15 14 O -0.58 -28.32 16.06 -3.77 -0.06 -28.38 15 15 C 0.01 0.43 6.83 41.99 0.29 0.72 15 16 C -0.08 -1.93 9.73 22.77 0.22 -1.71 15 17 C -0.09 -1.29 10.20 22.49 0.23 -1.06 15 18 C 0.06 0.91 11.31 84.72 0.96 1.87 15 19 N -0.27 -7.46 11.51 -57.15 -0.66 -8.12 15 20 N -0.24 -8.10 10.75 -48.49 -0.52 -8.62 15 21 H 0.02 0.84 8.14 -2.39 -0.02 0.82 15 22 H 0.07 4.12 6.07 -2.39 -0.01 4.11 15 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.27 14.58 8.31 -92.70 -0.77 13.81 15 25 H 0.41 17.56 7.90 -92.71 -0.73 16.83 15 26 H 0.17 3.75 7.72 -2.91 -0.02 3.73 15 27 H 0.21 0.61 8.06 -2.91 -0.02 0.59 15 28 H 0.23 1.19 8.06 -2.91 -0.02 1.17 15 Total: -1.00 -71.59 254.96 3.04 -68.55 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.45 Total: 14.06 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 3.82 Total: 4.01 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -3.21 Total: -103.27 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.06 Total: -28.38 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -71.59 3.04 -68.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260011125.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.795 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds