Wall clock time and date at job start Mon Mar 30 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47095 * 264.79707 * 3 2 1 5 5 H 1.48501 * 109.46697 * 24.78982 * 3 2 1 6 6 H 1.48496 * 109.47043 * 144.79069 * 3 2 1 7 7 C 1.37878 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00296 * 5.55784 * 7 2 1 9 9 C 1.50707 * 119.99808 * 185.55630 * 7 2 1 10 10 H 1.09000 * 109.12636 * 34.21173 * 9 7 2 11 11 C 1.52857 * 109.29726 * 274.73215 * 9 7 2 12 12 C 1.53437 * 108.83550 * 188.39039 * 11 9 7 13 13 N 1.46920 * 107.79022 * 63.20941 * 12 11 9 14 14 C 1.39928 * 118.92408 * 315.36736 * 13 12 11 15 15 C 1.39097 * 119.11635 * 193.29766 * 14 13 12 16 16 C 1.38034 * 120.08092 * 180.18312 * 15 14 13 17 17 C 1.38271 * 119.94162 * 0.02562 * 16 15 14 18 18 C 1.38360 * 120.12733 * 359.64746 * 17 16 15 19 19 F 1.35101 * 119.87198 * 180.28802 * 18 17 16 20 20 C 1.38560 * 120.83689 * 13.36250 * 14 13 12 21 21 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.57745 * 308.19533 * 11 9 7 23 23 H 1.09002 * 109.57823 * 68.45809 * 11 9 7 24 24 H 1.09002 * 109.79658 * 182.77727 * 12 11 9 25 25 H 1.08997 * 109.79948 * 303.57687 * 12 11 9 26 26 H 0.96996 * 120.54325 * 135.31651 * 13 12 11 27 27 H 1.07996 * 119.96173 * 0.21170 * 15 14 13 28 28 H 1.08005 * 120.02636 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.93822 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6067 1.9829 -1.3943 5 1 1.3959 2.6819 0.5871 6 1 3.4873 1.4744 0.8072 7 6 2.0045 -1.1941 0.0005 8 1 1.4683 -2.1272 -0.0896 9 6 3.5063 -1.1971 0.1269 10 1 3.8119 -0.3749 0.7740 11 6 4.1300 -1.0102 -1.2561 12 6 5.6455 -1.2243 -1.1490 13 7 5.8743 -2.6151 -0.7343 14 6 5.0950 -3.1506 0.2971 15 6 5.4806 -4.3518 0.8830 16 6 4.7245 -4.8999 1.8995 17 6 3.5820 -4.2542 2.3350 18 6 3.1992 -3.0559 1.7590 19 9 2.0852 -2.4264 2.1925 20 6 3.9520 -2.5008 0.7345 21 1 -0.4850 0.8400 -0.0004 22 1 3.7065 -1.7373 -1.9489 23 1 3.9262 -0.0015 -1.6154 24 1 6.1128 -1.0463 -2.1176 25 1 6.0631 -0.5436 -0.4072 26 1 6.5539 -3.1536 -1.1689 27 1 6.3730 -4.8559 0.5427 28 1 5.0245 -5.8328 2.3535 29 1 2.9902 -4.6834 3.1300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260030572.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:04 Heat of formation + Delta-G solvation = -17.880499 kcal Electronic energy + Delta-G solvation = -15158.107965 eV Core-core repulsion = 12574.237532 eV Total energy + Delta-G solvation = -2583.870433 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.64114 -39.23544 -35.77443 -33.57744 -31.47386 -29.88369 -28.61187 -25.93914 -22.84665 -22.52001 -21.22739 -18.94070 -17.27247 -16.93346 -16.03508 -15.30593 -14.62201 -14.37776 -14.22639 -14.07214 -13.37864 -12.89666 -12.54109 -12.19668 -12.10419 -11.79997 -11.52127 -11.27808 -10.97118 -10.54179 -10.19626 -9.90059 -9.62291 -9.32185 -9.12830 -8.45379 -7.71035 -6.91149 -6.01338 -3.97805 1.96722 2.08605 3.27944 3.36323 3.37736 3.88779 4.35344 4.43995 5.18783 5.27051 5.37983 5.52811 5.65912 5.75090 5.80729 5.93466 6.06673 6.07271 6.53671 6.62730 6.70218 6.76851 6.86270 6.93758 7.14121 7.36935 7.49378 7.71565 7.88642 8.20467 8.55764 9.02932 9.59113 11.12222 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030244 B = 0.013192 C = 0.009867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.587578 B = 2121.909767 C = 2836.954213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.869 3.131 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.496 4.496 8 H 0.075 0.925 9 C 0.048 3.952 10 H 0.047 0.953 11 C -0.131 4.131 12 C 0.117 3.883 13 N -0.750 5.750 14 C 0.226 3.774 15 C -0.217 4.217 16 C -0.069 4.069 17 C -0.224 4.224 18 C 0.161 3.839 19 F -0.113 7.113 20 C -0.148 4.148 21 H 0.263 0.737 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.395 0.605 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.816 -5.187 0.378 12.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.127 4.127 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.534 4.534 8 H 0.093 0.907 9 C 0.029 3.971 10 H 0.065 0.935 11 C -0.169 4.169 12 C -0.007 4.007 13 N -0.381 5.381 14 C 0.124 3.876 15 C -0.240 4.240 16 C -0.087 4.087 17 C -0.245 4.245 18 C 0.141 3.859 19 F -0.091 7.091 20 C -0.154 4.154 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.229 0.771 27 H 0.132 0.868 28 H 0.137 0.863 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.540 -4.827 0.352 12.514 hybrid contribution 0.403 0.794 -0.185 0.909 sum 11.943 -4.034 0.166 12.607 Atomic orbital electron populations 1.69898 1.06155 1.26707 1.50796 1.24944 0.94619 0.98538 0.94643 0.87026 0.80400 0.84266 0.78584 1.20136 1.21578 1.18892 1.20844 0.87995 0.94807 1.49733 0.90714 1.18097 0.97178 0.90195 0.91635 0.93485 1.22217 0.92302 1.01461 1.00967 1.21688 0.98295 0.82312 0.98453 1.44569 1.40922 1.13503 1.39135 1.17412 0.89631 0.92132 0.88437 1.20502 1.02992 0.98249 1.02221 1.20444 0.93859 0.98528 0.95898 1.20832 1.01056 0.97143 1.05461 1.17412 0.83879 0.90858 0.93799 1.91608 1.48542 1.81314 1.87625 1.19820 0.94411 1.01622 0.99509 0.92746 0.91497 0.92018 0.91429 0.93127 0.77085 0.86815 0.86311 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 15 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 15 3 Si 0.87 21.41 25.86 -169.99 -4.40 17.01 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 15 6 H -0.26 -6.24 6.13 56.52 0.35 -5.89 15 7 C -0.50 -14.01 6.59 -34.44 -0.23 -14.24 15 8 H 0.07 2.35 7.60 -52.49 -0.40 1.95 15 9 C 0.05 1.14 1.78 -93.05 -0.17 0.98 15 10 H 0.05 1.18 5.67 -51.93 -0.29 0.88 15 11 C -0.13 -2.69 5.17 -26.58 -0.14 -2.82 15 12 C 0.12 1.89 7.11 -3.59 -0.03 1.86 15 13 N -0.75 -11.77 5.80 -58.09 -0.34 -12.11 15 14 C 0.23 4.18 6.47 -83.72 -0.54 3.64 15 15 C -0.22 -3.44 9.87 -39.34 -0.39 -3.83 15 16 C -0.07 -1.07 10.04 -39.64 -0.40 -1.47 15 17 C -0.22 -4.07 10.01 -39.52 -0.40 -4.47 15 18 C 0.16 3.57 6.85 -39.36 -0.27 3.30 15 19 F -0.11 -2.85 14.66 2.25 0.03 -2.82 15 20 C -0.15 -3.27 5.46 -104.38 -0.57 -3.84 15 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 22 H 0.07 1.43 8.12 -51.93 -0.42 1.00 15 23 H 0.06 1.27 6.32 -51.93 -0.33 0.94 15 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.40 4.87 8.86 -40.82 -0.36 4.51 15 27 H 0.11 1.46 8.06 -52.49 -0.42 1.03 15 28 H 0.12 1.44 8.06 -52.48 -0.42 1.02 15 29 H 0.12 1.95 8.06 -52.49 -0.42 1.52 15 LS Contribution 240.79 15.07 3.63 3.63 Total: -1.00 -31.22 240.79 -6.62 -37.85 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.11 Total: 2.22 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -3.22 Total: -18.85 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.44 Total: -39.03 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.03 Total: -2.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.40 Total: 17.01 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.22 -6.62 -37.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030572.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.965 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds