Wall clock time and date at job start Mon Mar 30 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47095 * 264.79707 * 3 2 1 5 5 H 1.48501 * 109.46697 * 24.78982 * 3 2 1 6 6 H 1.48496 * 109.47043 * 144.79069 * 3 2 1 7 7 C 1.37878 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00296 * 5.55784 * 7 2 1 9 9 C 1.50707 * 119.99808 * 185.55630 * 7 2 1 10 10 H 1.09000 * 109.12636 * 34.21173 * 9 7 2 11 11 C 1.52857 * 109.29726 * 274.73215 * 9 7 2 12 12 C 1.53437 * 108.83550 * 188.39039 * 11 9 7 13 13 N 1.46920 * 107.79022 * 63.20941 * 12 11 9 14 14 C 1.39928 * 118.92408 * 315.36736 * 13 12 11 15 15 C 1.39097 * 119.11635 * 193.29766 * 14 13 12 16 16 C 1.38034 * 120.08092 * 180.18312 * 15 14 13 17 17 C 1.38271 * 119.94162 * 0.02562 * 16 15 14 18 18 C 1.38360 * 120.12733 * 359.64746 * 17 16 15 19 19 F 1.35101 * 119.87198 * 180.28802 * 18 17 16 20 20 C 1.38560 * 120.83689 * 13.36250 * 14 13 12 21 21 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.57745 * 308.19533 * 11 9 7 23 23 H 1.09002 * 109.57823 * 68.45809 * 11 9 7 24 24 H 1.09002 * 109.79658 * 182.77727 * 12 11 9 25 25 H 1.08997 * 109.79948 * 303.57687 * 12 11 9 26 26 H 0.96996 * 120.54325 * 135.31651 * 13 12 11 27 27 H 1.07996 * 119.96173 * 0.21170 * 15 14 13 28 28 H 1.08005 * 120.02636 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.93822 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6067 1.9829 -1.3943 5 1 1.3959 2.6819 0.5871 6 1 3.4873 1.4744 0.8072 7 6 2.0045 -1.1941 0.0005 8 1 1.4683 -2.1272 -0.0896 9 6 3.5063 -1.1971 0.1269 10 1 3.8119 -0.3749 0.7740 11 6 4.1300 -1.0102 -1.2561 12 6 5.6455 -1.2243 -1.1490 13 7 5.8743 -2.6151 -0.7343 14 6 5.0950 -3.1506 0.2971 15 6 5.4806 -4.3518 0.8830 16 6 4.7245 -4.8999 1.8995 17 6 3.5820 -4.2542 2.3350 18 6 3.1992 -3.0559 1.7590 19 9 2.0852 -2.4264 2.1925 20 6 3.9520 -2.5008 0.7345 21 1 -0.4850 0.8400 -0.0004 22 1 3.7065 -1.7373 -1.9489 23 1 3.9262 -0.0015 -1.6154 24 1 6.1128 -1.0463 -2.1176 25 1 6.0631 -0.5436 -0.4072 26 1 6.5539 -3.1536 -1.1689 27 1 6.3730 -4.8559 0.5427 28 1 5.0245 -5.8328 2.3535 29 1 2.9902 -4.6834 3.1300 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260030572.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:04 Heat of formation + Delta-G solvation = -39.568666 kcal Electronic energy + Delta-G solvation = -15159.048434 eV Core-core repulsion = 12574.237532 eV Total energy + Delta-G solvation = -2584.810902 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.43586 -40.68590 -37.22249 -35.38198 -33.42855 -31.29932 -30.10382 -27.76023 -24.42174 -24.07277 -22.80881 -20.50677 -19.14868 -18.66510 -17.50597 -16.87025 -16.32476 -16.06306 -15.98913 -15.58460 -14.79948 -14.76579 -14.34652 -13.79059 -13.59599 -13.43717 -13.10833 -12.74022 -12.69747 -12.36657 -11.88525 -11.74824 -11.30682 -11.22865 -10.71748 -10.59845 -9.27722 -8.26152 -8.24371 -6.24609 0.50799 0.67040 1.29608 1.34437 1.42975 2.35051 2.64397 2.91858 3.08770 3.78402 4.03439 4.15053 4.28494 4.32396 4.42492 4.54288 4.65843 4.74853 4.89902 5.04219 5.17460 5.33216 5.41968 5.44166 5.60481 5.66494 5.76115 6.02557 6.32546 6.44751 6.75449 7.09366 7.34948 8.93308 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030244 B = 0.013192 C = 0.009867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.587578 B = 2121.909767 C = 2836.954213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.008 3.992 3 Si 0.937 3.063 4 H -0.252 1.252 5 H -0.292 1.292 6 H -0.248 1.248 7 C -0.489 4.489 8 H 0.020 0.980 9 C 0.047 3.953 10 H 0.032 0.968 11 C -0.128 4.128 12 C 0.124 3.876 13 N -0.738 5.738 14 C 0.223 3.777 15 C -0.202 4.202 16 C -0.052 4.052 17 C -0.229 4.229 18 C 0.113 3.887 19 F -0.149 7.149 20 C -0.190 4.190 21 H 0.263 0.737 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.056 0.944 26 H 0.416 0.584 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.940 -6.090 -0.187 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.188 4.188 3 Si 0.761 3.239 4 H -0.177 1.177 5 H -0.218 1.218 6 H -0.172 1.172 7 C -0.527 4.527 8 H 0.039 0.961 9 C 0.028 3.972 10 H 0.050 0.950 11 C -0.167 4.167 12 C -0.001 4.001 13 N -0.371 5.371 14 C 0.119 3.881 15 C -0.224 4.224 16 C -0.071 4.071 17 C -0.250 4.250 18 C 0.093 3.907 19 F -0.128 7.128 20 C -0.196 4.196 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.130 0.870 25 H 0.074 0.926 26 H 0.254 0.746 27 H 0.177 0.823 28 H 0.184 0.816 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 15.717 -5.755 -0.241 16.739 hybrid contribution -0.868 0.875 0.021 1.233 sum 14.849 -4.879 -0.220 15.631 Atomic orbital electron populations 1.70079 1.08263 1.27698 1.53388 1.25874 0.95449 1.02857 0.94616 0.85931 0.79264 0.78720 0.79967 1.17653 1.21848 1.17223 1.20996 0.90795 0.92592 1.48284 0.96149 1.17990 0.94118 0.91401 0.93643 0.94994 1.22050 0.95862 1.00918 0.97894 1.21670 0.94644 0.82704 1.01043 1.44520 1.40698 1.13590 1.38244 1.17575 0.88725 0.92795 0.88989 1.21012 1.03792 0.96699 1.00895 1.21009 0.91823 0.99340 0.94888 1.21102 1.02394 0.95768 1.05692 1.18042 0.83890 0.92973 0.95779 1.91502 1.50653 1.82360 1.88287 1.19806 0.96909 1.01905 1.00968 0.92820 0.93060 0.92195 0.87011 0.92579 0.74556 0.82308 0.81553 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.40 13.96 21.45 0.30 -62.10 15 2 C 0.01 0.48 5.47 84.65 0.46 0.94 15 3 Si 0.94 45.30 25.86 68.60 1.77 47.07 15 4 H -0.25 -11.15 7.11 99.48 0.71 -10.45 15 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 15 6 H -0.25 -11.24 6.13 99.48 0.61 -10.63 15 7 C -0.49 -29.32 6.59 25.60 0.17 -29.15 15 8 H 0.02 1.39 7.60 -2.91 -0.02 1.37 15 9 C 0.05 2.31 1.78 -12.37 -0.02 2.29 15 10 H 0.03 1.63 5.67 -2.39 -0.01 1.62 15 11 C -0.13 -5.15 5.17 30.69 0.16 -4.99 15 12 C 0.12 3.53 7.11 86.45 0.61 4.15 15 13 N -0.74 -20.06 5.80 -337.70 -1.96 -22.02 15 14 C 0.22 7.62 6.47 38.13 0.25 7.87 15 15 C -0.20 -5.42 9.87 22.43 0.22 -5.19 15 16 C -0.05 -1.41 10.04 22.23 0.22 -1.19 15 17 C -0.23 -8.11 10.01 22.31 0.22 -7.88 15 18 C 0.11 5.20 6.85 22.41 0.15 5.35 15 19 F -0.15 -8.19 14.66 44.97 0.66 -7.53 15 20 C -0.19 -8.48 5.46 -19.71 -0.11 -8.59 15 21 H 0.26 16.10 8.31 -92.71 -0.77 15.33 15 22 H 0.05 2.17 8.12 -2.39 -0.02 2.15 15 23 H 0.06 2.37 6.32 -2.39 -0.02 2.36 15 24 H 0.11 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 15 26 H 0.42 7.93 8.86 -92.71 -0.82 7.11 15 27 H 0.16 2.90 8.06 -2.91 -0.02 2.87 15 28 H 0.17 2.95 8.06 -2.91 -0.02 2.93 15 29 H 0.13 4.24 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -75.05 240.79 3.37 -71.68 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.25 Total: 9.29 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 2.34 Total: -36.39 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.66 Total: -84.13 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.66 Total: -7.53 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.77 Total: 47.07 kcal Total: -75.05 3.37 -71.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030572.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.108 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds