Wall clock time and date at job start Mon Mar 30 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00225 * 2 1 4 4 H 1.48498 * 109.47212 * 239.99988 * 3 2 1 5 5 H 1.48501 * 109.47408 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47219 * 120.00047 * 3 2 1 7 7 C 1.37883 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99516 * 185.99386 * 7 2 1 9 9 C 1.50699 * 119.99962 * 5.99306 * 7 2 1 10 10 H 1.08996 * 109.30204 * 335.51638 * 9 7 2 11 11 C 1.52851 * 109.30088 * 95.10814 * 9 7 2 12 12 C 1.53434 * 108.83902 * 171.63523 * 11 9 7 13 13 N 1.46924 * 107.79386 * 296.80655 * 12 11 9 14 14 C 1.39919 * 118.92720 * 44.64695 * 13 12 11 15 15 C 1.39095 * 119.12289 * 166.70511 * 14 13 12 16 16 C 1.38032 * 120.08760 * 179.78973 * 15 14 13 17 17 C 1.38270 * 119.93621 * 359.94920 * 16 15 14 18 18 C 1.38358 * 120.13335 * 0.31488 * 17 16 15 19 19 F 1.35095 * 119.87556 * 179.77581 * 18 17 16 20 20 C 1.38567 * 120.83750 * 346.54028 * 14 13 12 21 21 H 0.97001 * 120.00017 * 5.03077 * 1 2 3 22 22 H 1.09006 * 109.57962 * 51.82892 * 11 9 7 23 23 H 1.09004 * 109.68540 * 291.50807 * 11 9 7 24 24 H 1.08998 * 109.79760 * 177.22879 * 12 11 9 25 25 H 1.09003 * 109.83902 * 56.40271 * 12 11 9 26 26 H 0.96997 * 120.53797 * 224.62958 * 13 12 11 27 27 H 1.07999 * 119.95616 * 359.81526 * 15 14 13 28 28 H 1.08003 * 120.03084 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.93301 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0801 -1.1968 0.0971 9 6 1.2571 -2.4956 -0.1374 10 1 0.2313 -2.3597 0.2052 11 6 1.2473 -2.9206 -1.6056 12 6 0.6724 -4.3396 -1.7068 13 7 1.5754 -5.2428 -0.9806 14 6 2.0564 -4.8537 0.2745 15 6 2.6750 -5.7996 1.0853 16 6 3.1606 -5.4366 2.3253 17 6 3.0327 -4.1306 2.7612 18 6 2.4131 -3.1884 1.9596 19 9 2.2869 -1.9149 2.3925 20 6 1.9257 -3.5451 0.7108 21 1 -0.4850 0.8368 -0.0737 22 1 2.2652 -2.9103 -1.9956 23 1 0.6282 -2.2337 -2.1826 24 1 0.6126 -4.6399 -2.7528 25 1 -0.3200 -4.3696 -1.2568 26 1 1.8339 -6.0951 -1.3648 27 1 2.7758 -6.8193 0.7441 28 1 3.6404 -6.1718 2.9543 29 1 3.4131 -3.8465 3.7313 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260030575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:07 Heat of formation + Delta-G solvation = -41.640061 kcal Electronic energy + Delta-G solvation = -15115.493216 eV Core-core repulsion = 12530.592491 eV Total energy + Delta-G solvation = -2584.900725 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.36765 -40.59205 -37.12728 -35.38846 -33.07898 -31.22450 -29.92701 -27.58718 -24.61371 -23.96793 -22.88899 -20.44468 -18.83409 -18.38517 -17.42375 -16.89892 -16.27088 -16.04755 -15.97797 -15.56608 -14.73487 -14.55228 -14.13233 -13.62387 -13.53203 -13.18955 -12.92471 -12.76587 -12.65925 -12.44318 -12.21266 -11.75604 -11.07495 -11.03086 -10.67203 -10.53866 -9.23669 -8.25176 -8.09094 -6.16757 0.56385 0.71859 1.36233 1.39169 1.46017 2.42631 2.68295 2.98374 3.17327 3.82616 4.12727 4.24278 4.37556 4.43848 4.47855 4.63706 4.71672 4.80687 5.13375 5.17934 5.37271 5.40285 5.49974 5.57290 5.63254 5.79428 5.90235 6.10298 6.30985 6.49942 6.89189 7.13440 7.45192 8.96617 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030587 B = 0.012117 C = 0.009342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.210610 B = 2310.159796 C = 2996.384619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.018 3.982 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.500 4.500 8 H 0.036 0.964 9 C 0.072 3.928 10 H 0.026 0.974 11 C -0.112 4.112 12 C 0.128 3.872 13 N -0.739 5.739 14 C 0.217 3.783 15 C -0.204 4.204 16 C -0.056 4.056 17 C -0.228 4.228 18 C 0.113 3.887 19 F -0.149 7.149 20 C -0.192 4.192 21 H 0.261 0.739 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.107 0.893 25 H 0.044 0.956 26 H 0.415 0.585 27 H 0.156 0.844 28 H 0.166 0.834 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -12.438 -0.436 13.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.180 4.180 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.044 0.956 11 C -0.151 4.151 12 C 0.003 3.997 13 N -0.372 5.372 14 C 0.113 3.887 15 C -0.226 4.226 16 C -0.075 4.075 17 C -0.248 4.248 18 C 0.093 3.907 19 F -0.127 7.127 20 C -0.197 4.197 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.125 0.875 25 H 0.063 0.937 26 H 0.252 0.748 27 H 0.174 0.826 28 H 0.184 0.816 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.925 -12.128 -0.465 12.756 hybrid contribution 0.217 1.526 0.016 1.542 sum 4.143 -10.602 -0.449 11.391 Atomic orbital electron populations 1.70013 1.07078 1.27587 1.52193 1.25567 0.95527 1.02043 0.94840 0.85833 0.78688 0.79829 0.78741 1.19204 1.20560 1.20399 1.21090 0.92343 0.91640 1.48697 0.94568 1.17561 0.95269 0.90579 0.91272 0.95622 1.21789 0.99496 0.95742 0.98077 1.21589 0.91828 0.89172 0.97101 1.44507 1.53070 1.22554 1.17020 1.17636 0.93208 0.90793 0.87026 1.20994 1.06624 0.99420 0.95544 1.20976 0.96665 0.94401 0.95427 1.21090 1.07646 0.94435 1.01665 1.17965 0.99699 0.79092 0.93906 1.91459 1.93886 1.38083 1.89298 1.20200 1.07774 0.95127 0.96600 0.92978 0.93609 0.93264 0.87528 0.93730 0.74761 0.82601 0.81631 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 12.75 21.45 0.27 -56.43 15 2 C 0.02 1.05 5.45 84.66 0.46 1.51 15 3 Si 0.94 46.37 29.54 68.60 2.03 48.39 15 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 15 5 H -0.28 -13.32 7.11 99.48 0.71 -12.62 15 6 H -0.28 -13.69 7.11 99.48 0.71 -12.99 15 7 C -0.50 -29.13 5.74 25.60 0.15 -28.98 15 8 H 0.04 2.17 7.81 -2.91 -0.02 2.14 15 9 C 0.07 3.79 2.35 -12.37 -0.03 3.76 15 10 H 0.03 1.56 7.21 -2.39 -0.02 1.55 15 11 C -0.11 -4.96 5.38 30.69 0.16 -4.80 15 12 C 0.13 4.22 7.11 86.44 0.61 4.83 15 13 N -0.74 -22.38 5.80 -337.69 -1.96 -24.33 15 14 C 0.22 7.93 6.47 38.13 0.25 8.18 15 15 C -0.20 -5.83 9.87 22.43 0.22 -5.60 15 16 C -0.06 -1.58 10.04 22.23 0.22 -1.35 15 17 C -0.23 -8.16 10.01 22.31 0.22 -7.93 15 18 C 0.11 5.28 6.96 22.41 0.16 5.44 15 19 F -0.15 -8.01 14.81 44.97 0.67 -7.35 15 20 C -0.19 -8.95 5.47 -19.70 -0.11 -9.05 15 21 H 0.26 15.15 8.32 -92.71 -0.77 14.38 15 22 H 0.05 2.03 8.12 -2.38 -0.02 2.01 15 23 H 0.05 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.11 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.41 9.05 8.86 -92.71 -0.82 8.23 15 27 H 0.16 3.14 8.06 -2.91 -0.02 3.12 15 28 H 0.17 3.09 8.06 -2.91 -0.02 3.06 15 29 H 0.14 4.26 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -69.67 248.01 3.67 -66.00 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.34 Total: 7.72 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 2.32 Total: -34.00 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -1.68 Total: -80.76 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 0.67 Total: -7.35 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -69.67 3.67 -66.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.359 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds