Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38582 * 120.96690 * 2 1 4 4 N 1.32166 * 120.06857 * 180.02562 * 3 2 1 5 5 N 1.28355 * 122.30429 * 359.97438 * 4 3 2 6 6 C 1.32784 * 122.02596 * 0.02562 * 5 4 3 7 7 C 1.48153 * 120.18283 * 180.02562 * 6 5 4 8 8 O 1.21521 * 120.00200 * 179.97438 * 7 6 5 9 9 N 1.34771 * 120.00269 * 359.97438 * 7 6 5 10 10 C 1.46498 * 120.00335 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46933 * 179.97438 * 10 9 7 12 12 H 1.07992 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99903 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99746 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46825 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47151 * 119.99970 * 15 13 11 18 18 H 1.48503 * 109.47007 * 240.00480 * 15 13 11 19 19 C 1.38823 * 120.96572 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47612 * 269.98492 * 1 2 3 21 21 H 1.09004 * 109.46826 * 29.97986 * 1 2 3 22 22 H 1.09000 * 109.47316 * 149.98002 * 1 2 3 23 23 H 1.08000 * 119.96049 * 0.04001 * 3 2 1 24 24 H 0.97008 * 119.99378 * 359.97438 * 9 7 6 25 25 H 1.08998 * 109.46889 * 299.99559 * 10 9 7 26 26 H 1.08994 * 109.47421 * 59.99762 * 10 9 7 27 27 H 0.97000 * 120.00054 * 180.02562 * 14 13 11 28 28 H 1.07998 * 121.05097 * 0.25846 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2200 1.1883 0.0000 4 7 3.5415 1.1676 -0.0005 5 7 4.2103 0.0721 -0.0005 6 6 3.6164 -1.1156 -0.0005 7 6 4.4287 -2.3546 0.0000 8 8 3.8818 -3.4397 0.0005 9 7 5.7743 -2.2782 0.0000 10 6 6.5775 -3.5034 0.0000 11 6 8.0412 -3.1444 -0.0007 12 1 8.3429 -2.1075 -0.0015 13 6 8.9952 -4.1399 -0.0003 14 7 8.6278 -5.4027 0.0001 15 14 10.8094 -3.6951 -0.0004 16 1 10.9567 -2.2173 -0.0015 17 1 11.4568 -4.2566 1.2123 18 1 11.4569 -4.2574 -1.2127 19 6 2.2212 -1.1904 -0.0005 20 1 -0.3634 -0.0003 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6952 2.1322 0.0007 24 1 6.2109 -1.4120 -0.0008 25 1 6.3471 -4.0889 0.8900 26 1 6.3470 -4.0890 -0.8899 27 1 9.2988 -6.1031 0.0008 28 1 1.7145 -2.1441 -0.0051 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260052900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = 9.001531 kcal Electronic energy + Delta-G solvation = -13983.974512 eV Core-core repulsion = 11421.189733 eV Total energy + Delta-G solvation = -2562.784779 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12995 -38.62381 -34.79362 -34.20109 -32.77219 -32.15998 -28.45719 -27.54842 -24.95160 -23.71171 -22.34355 -20.07383 -18.17512 -17.26048 -16.75304 -15.84931 -15.40290 -15.07444 -14.43542 -14.17916 -13.88013 -13.38748 -13.36416 -12.92240 -12.69549 -11.98913 -11.90953 -11.36098 -10.96093 -10.91049 -10.32429 -10.06286 -9.89865 -9.83597 -9.44626 -9.36115 -8.75720 -7.97092 -6.16680 -4.23121 0.51710 0.69182 2.98242 3.26020 3.33051 3.37198 3.60345 3.87266 4.04118 4.31839 4.34576 4.48869 4.64974 4.74977 5.17645 5.20026 5.22623 5.33807 5.50382 5.75753 5.82487 6.09060 7.21776 7.30527 7.45620 7.65557 7.93922 8.44627 8.62140 8.71207 8.95700 9.42985 10.93643 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.059354 B = 0.005586 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.632549 B = 5010.977870 C = 5462.164356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C 0.044 3.956 4 N -0.240 5.240 5 N -0.217 5.217 6 C 0.043 3.957 7 C 0.553 3.447 8 O -0.545 6.545 9 N -0.681 5.681 10 C 0.246 3.754 11 C -0.543 4.543 12 H 0.067 0.933 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.905 3.095 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.074 4.074 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.173 0.827 24 H 0.404 0.596 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.534 11.270 0.022 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.120 4.120 4 N -0.082 5.082 5 N -0.064 5.064 6 C -0.103 4.103 7 C 0.334 3.666 8 O -0.423 6.423 9 N -0.328 5.328 10 C 0.126 3.874 11 C -0.581 4.581 12 H 0.085 0.915 13 C -0.140 4.140 14 N -0.524 5.524 15 Si 0.732 3.268 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.103 4.103 20 H 0.101 0.899 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.190 0.810 24 H 0.238 0.762 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.350 11.112 0.020 17.370 hybrid contribution -0.174 -0.228 0.007 0.287 sum -13.524 10.884 0.026 17.359 Atomic orbital electron populations 1.20804 0.88672 1.04002 1.03454 1.21166 0.98627 0.93356 0.97257 1.24360 0.92665 0.99116 0.95826 1.73118 1.06894 1.19536 1.08660 1.73258 1.31356 0.94551 1.07242 1.23290 0.93573 0.95423 0.98001 1.17624 0.83384 0.86289 0.79348 1.90761 1.72013 1.27514 1.52024 1.46453 1.04630 1.13100 1.68654 1.19277 0.89040 0.80981 0.98150 1.21270 0.90072 0.93659 1.53105 0.91516 1.24947 0.99733 0.94708 0.94606 1.69981 1.34231 0.99149 1.49041 0.86327 0.83969 0.78755 0.77713 1.19470 1.20785 1.20791 1.22371 0.93614 1.00237 0.94125 0.89918 0.90412 0.90354 0.80992 0.76162 0.94964 0.94970 0.92477 0.82125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.07 36.00 0.36 -0.31 15 2 C -0.09 -0.96 5.92 -104.28 -0.62 -1.57 15 3 C 0.04 0.48 11.02 -17.28 -0.19 0.29 15 4 N -0.24 -3.61 11.51 30.59 0.35 -3.26 15 5 N -0.22 -3.76 10.75 33.32 0.36 -3.40 15 6 C 0.04 0.75 6.83 -82.83 -0.57 0.19 15 7 C 0.55 11.74 7.82 -12.19 -0.10 11.65 15 8 O -0.54 -12.94 16.39 5.35 0.09 -12.85 15 9 N -0.68 -15.42 5.54 -62.33 -0.35 -15.76 15 10 C 0.25 6.60 5.43 -5.19 -0.03 6.58 15 11 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 15 12 H 0.07 1.76 7.60 -52.49 -0.40 1.36 15 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 14 N -0.89 -26.15 13.29 55.43 0.74 -25.41 15 15 Si 0.91 21.18 29.54 -169.99 -5.02 16.15 15 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 19 C -0.07 -1.01 9.45 -38.81 -0.37 -1.37 15 20 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 15 21 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 15 22 H 0.08 0.44 8.11 -51.93 -0.42 0.02 15 23 H 0.17 1.15 8.06 -52.49 -0.42 0.73 15 24 H 0.40 8.47 7.68 -40.82 -0.31 8.16 15 25 H 0.03 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.03 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 28 H 0.16 2.01 7.72 -52.49 -0.41 1.61 15 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -32.47 259.61 -4.62 -37.09 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.78 Total: 1.76 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.92 Total: 1.77 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 1.10 Total: -47.83 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.47 -4.62 -37.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.090 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds