Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38582 * 120.96690 * 2 1 4 4 N 1.32166 * 120.06857 * 180.02562 * 3 2 1 5 5 N 1.28355 * 122.30429 * 359.97438 * 4 3 2 6 6 C 1.32784 * 122.02596 * 0.02562 * 5 4 3 7 7 C 1.48153 * 120.18283 * 180.02562 * 6 5 4 8 8 O 1.21521 * 120.00200 * 179.97438 * 7 6 5 9 9 N 1.34771 * 120.00269 * 359.97438 * 7 6 5 10 10 C 1.46498 * 120.00335 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.46933 * 179.97438 * 10 9 7 12 12 H 1.07992 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99903 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99746 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46825 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47151 * 119.99970 * 15 13 11 18 18 H 1.48503 * 109.47007 * 240.00480 * 15 13 11 19 19 C 1.38823 * 120.96572 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47612 * 269.98492 * 1 2 3 21 21 H 1.09004 * 109.46826 * 29.97986 * 1 2 3 22 22 H 1.09000 * 109.47316 * 149.98002 * 1 2 3 23 23 H 1.08000 * 119.96049 * 0.04001 * 3 2 1 24 24 H 0.97008 * 119.99378 * 359.97438 * 9 7 6 25 25 H 1.08998 * 109.46889 * 299.99559 * 10 9 7 26 26 H 1.08994 * 109.47421 * 59.99762 * 10 9 7 27 27 H 0.97000 * 120.00054 * 180.02562 * 14 13 11 28 28 H 1.07998 * 121.05097 * 0.25846 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2200 1.1883 0.0000 4 7 3.5415 1.1676 -0.0005 5 7 4.2103 0.0721 -0.0005 6 6 3.6164 -1.1156 -0.0005 7 6 4.4287 -2.3546 0.0000 8 8 3.8818 -3.4397 0.0005 9 7 5.7743 -2.2782 0.0000 10 6 6.5775 -3.5034 0.0000 11 6 8.0412 -3.1444 -0.0007 12 1 8.3429 -2.1075 -0.0015 13 6 8.9952 -4.1399 -0.0003 14 7 8.6278 -5.4027 0.0001 15 14 10.8094 -3.6951 -0.0004 16 1 10.9567 -2.2173 -0.0015 17 1 11.4568 -4.2566 1.2123 18 1 11.4569 -4.2574 -1.2127 19 6 2.2212 -1.1904 -0.0005 20 1 -0.3634 -0.0003 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6952 2.1322 0.0007 24 1 6.2109 -1.4120 -0.0008 25 1 6.3471 -4.0889 0.8900 26 1 6.3470 -4.0890 -0.8899 27 1 9.2988 -6.1031 0.0008 28 1 1.7145 -2.1441 -0.0051 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260052900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = -15.887086 kcal Electronic energy + Delta-G solvation = -13985.053764 eV Core-core repulsion = 11421.189733 eV Total energy + Delta-G solvation = -2563.864030 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.27554 -40.32960 -36.36507 -35.54520 -34.47939 -33.71343 -29.55722 -29.22698 -26.36830 -24.92505 -24.08941 -21.71295 -19.73281 -18.59504 -17.93901 -17.55419 -16.92205 -16.75660 -16.29139 -15.68364 -15.11567 -14.61674 -14.14662 -14.11088 -13.96749 -13.90378 -13.28963 -12.95465 -12.76792 -12.47789 -12.23965 -11.51451 -11.26397 -11.15729 -10.88630 -10.85238 -10.78689 -9.98079 -8.32142 -6.48413 -0.61750 -0.31919 1.42424 1.43363 1.57559 1.58260 2.07223 2.39148 2.55159 2.85655 3.02767 3.39856 3.53842 3.65529 3.82470 4.02327 4.48949 4.74394 4.80913 4.96119 5.01132 5.05927 5.16859 5.32413 5.35660 5.57690 5.78452 6.57960 6.65438 7.09022 7.26347 7.47734 8.80191 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.059354 B = 0.005586 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.632549 B = 5010.977870 C = 5462.164356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C 0.058 3.942 4 N -0.266 5.266 5 N -0.245 5.245 6 C 0.021 3.979 7 C 0.554 3.446 8 O -0.578 6.578 9 N -0.685 5.685 10 C 0.263 3.737 11 C -0.560 4.560 12 H 0.079 0.921 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.985 3.015 16 H -0.258 1.258 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.086 4.086 20 H 0.101 0.899 21 H 0.107 0.893 22 H 0.084 0.916 23 H 0.224 0.776 24 H 0.412 0.588 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.271 0.729 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.773 13.804 0.026 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.078 4.078 3 C -0.105 4.105 4 N -0.107 5.107 5 N -0.092 5.092 6 C -0.125 4.125 7 C 0.338 3.662 8 O -0.458 6.458 9 N -0.333 5.333 10 C 0.141 3.859 11 C -0.598 4.598 12 H 0.097 0.903 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.808 3.192 16 H -0.181 1.181 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.114 4.114 20 H 0.120 0.880 21 H 0.126 0.874 22 H 0.103 0.897 23 H 0.240 0.760 24 H 0.248 0.752 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.080 0.920 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.608 13.682 0.024 20.015 hybrid contribution -0.006 -0.928 0.007 0.929 sum -14.614 12.754 0.031 19.397 Atomic orbital electron populations 1.20995 0.84806 1.05859 1.05091 1.21668 1.00911 0.91520 0.93700 1.25181 0.91306 1.01414 0.92620 1.73042 1.09263 1.18381 1.10020 1.73170 1.32698 0.94856 1.08447 1.22670 0.94456 0.93767 1.01585 1.18193 0.82925 0.87620 0.77463 1.90719 1.72520 1.29435 1.53089 1.46214 1.05301 1.11958 1.69800 1.18750 0.89991 0.82097 0.95045 1.21603 0.90376 0.94444 1.53355 0.90330 1.26018 1.05156 0.94398 0.93649 1.70119 1.36237 1.00483 1.49693 0.85105 0.77104 0.79080 0.77922 1.18118 1.20099 1.20112 1.22542 0.92138 1.02152 0.94611 0.88030 0.87415 0.89724 0.75985 0.75208 0.98268 0.98276 0.92045 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.07 71.23 0.72 -0.06 15 2 C -0.07 -1.14 5.92 -19.64 -0.12 -1.25 15 3 C 0.06 1.04 11.02 84.72 0.93 1.97 15 4 N -0.27 -7.51 11.51 -57.15 -0.66 -8.17 15 5 N -0.24 -8.48 10.75 -48.48 -0.52 -9.01 15 6 C 0.02 0.75 6.83 41.99 0.29 1.04 15 7 C 0.55 24.75 7.82 86.88 0.68 25.43 15 8 O -0.58 -28.96 16.39 -3.78 -0.06 -29.02 15 9 N -0.68 -32.65 5.54 -469.42 -2.60 -35.25 15 10 C 0.26 15.00 5.43 85.63 0.46 15.47 15 11 C -0.56 -31.85 9.28 25.60 0.24 -31.62 15 12 H 0.08 4.18 7.60 -2.91 -0.02 4.16 15 13 C 0.01 0.44 5.46 84.66 0.46 0.90 15 14 N -0.93 -56.25 13.29 21.45 0.28 -55.96 15 15 Si 0.98 43.57 29.54 68.60 2.03 45.59 15 16 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 19 C -0.09 -2.24 9.45 22.77 0.22 -2.02 15 20 H 0.10 0.48 8.14 -2.39 -0.02 0.46 15 21 H 0.11 0.22 8.11 -2.38 -0.02 0.20 15 22 H 0.08 0.58 8.11 -2.39 -0.02 0.56 15 23 H 0.22 1.62 8.06 -2.91 -0.02 1.60 15 24 H 0.41 18.04 7.68 -92.70 -0.71 17.33 15 25 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 15 26 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 15 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 28 H 0.17 4.06 7.72 -2.91 -0.02 4.04 15 Total: -1.00 -74.46 259.61 2.82 -71.64 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.47 Total: 10.31 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 3.88 Total: 9.86 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -3.49 Total: -108.38 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.06 Total: -29.02 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.46 2.82 -71.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.751 kcal (2) G-P(sol) polarization free energy of solvation -74.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds