Wall clock time and date at job start Mon Mar 30 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38568 * 119.97063 * 2 1 4 4 C 1.38819 * 118.07134 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89886 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18118 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00127 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99417 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99187 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46512 * 180.02562 * 9 8 6 11 11 H 1.07996 * 120.00253 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00048 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99598 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00315 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47185 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47143 * 119.99557 * 14 12 10 17 17 H 1.48499 * 109.47127 * 239.99733 * 14 12 10 18 18 N 1.32780 * 119.63339 * 0.02562 * 5 4 3 19 19 N 1.28350 * 122.02809 * 0.02562 * 18 5 4 20 20 H 1.08989 * 109.47046 * 269.98045 * 1 2 3 21 21 H 1.09003 * 109.46799 * 29.97980 * 1 2 3 22 22 H 1.09006 * 109.47092 * 149.97641 * 1 2 3 23 23 H 1.07998 * 120.96440 * 359.97438 * 3 2 1 24 24 H 1.08000 * 121.05109 * 179.97438 * 4 3 2 25 25 H 0.96994 * 120.00291 * 0.02562 * 8 6 5 26 26 H 1.08995 * 109.47880 * 300.00107 * 9 8 6 27 27 H 1.08994 * 109.46915 * 60.00815 * 9 8 6 28 28 H 0.97004 * 119.99494 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1992 -0.1014 -0.0005 6 6 5.6768 -0.2095 -0.0017 7 8 6.3594 0.7957 -0.0031 8 7 6.2636 -1.4228 -0.0011 9 6 7.7248 -1.5296 -0.0028 10 6 8.1221 -2.9833 -0.0024 11 1 7.3623 -3.7508 -0.0014 12 6 9.4556 -3.3335 -0.0032 13 7 10.3809 -2.3988 -0.0049 14 14 9.9482 -5.1354 -0.0035 15 1 8.7282 -5.9820 -0.0032 16 1 10.7531 -5.4284 -1.2166 17 1 10.7548 -5.4282 1.2085 18 7 3.4496 -1.1974 -0.0005 19 7 2.1672 -1.1451 -0.0010 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6746 2.1444 -0.0004 24 1 4.1741 2.0607 -0.0010 25 1 5.7187 -2.2252 -0.0003 26 1 8.1236 -1.0446 -0.8937 27 1 8.1256 -1.0428 0.8862 28 1 11.3192 -2.6452 -0.0059 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:10 Heat of formation + Delta-G solvation = 10.048627 kcal Electronic energy + Delta-G solvation = -13958.138930 eV Core-core repulsion = 11395.399557 eV Total energy + Delta-G solvation = -2562.739373 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12726 -38.63996 -34.42619 -34.03543 -33.02263 -32.30799 -28.91041 -27.09371 -25.02486 -23.58507 -22.38376 -20.33469 -18.23275 -17.42545 -16.13242 -15.59960 -15.48124 -15.08502 -14.53961 -14.27907 -14.11752 -13.36872 -13.05707 -12.90782 -12.61028 -11.98811 -11.87699 -11.43664 -10.95935 -10.90792 -10.33433 -10.32373 -9.78758 -9.75181 -9.44777 -9.36064 -8.75486 -7.96574 -6.16570 -4.23009 0.50723 0.71799 2.96988 3.26010 3.33052 3.37220 3.60267 3.87337 3.97392 4.30632 4.36248 4.49136 4.75629 4.86360 5.17362 5.20100 5.23363 5.26345 5.63146 5.70769 5.89595 6.09653 7.22161 7.31010 7.45922 7.65732 7.94128 8.45197 8.62541 8.71559 8.96078 9.43100 10.93728 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053713 B = 0.005589 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.168391 B = 5008.696991 C = 5509.419701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.071 3.929 3 C -0.127 4.127 4 C -0.066 4.066 5 C 0.031 3.969 6 C 0.554 3.446 7 O -0.545 6.545 8 N -0.682 5.682 9 C 0.246 3.754 10 C -0.543 4.543 11 H 0.067 0.933 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.905 3.095 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.207 5.207 19 N -0.244 5.244 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.154 0.846 24 H 0.162 0.838 25 H 0.403 0.597 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.730 5.972 0.028 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.072 4.072 3 C -0.155 4.155 4 C -0.095 4.095 5 C -0.115 4.115 6 C 0.335 3.665 7 O -0.424 6.424 8 N -0.329 5.329 9 C 0.126 3.874 10 C -0.581 4.581 11 H 0.085 0.915 12 C -0.140 4.140 13 N -0.524 5.524 14 Si 0.732 3.268 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.052 5.052 19 N -0.089 5.089 20 H 0.103 0.897 21 H 0.098 0.902 22 H 0.102 0.898 23 H 0.172 0.828 24 H 0.180 0.820 25 H 0.238 0.762 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.011 5.027 0.024 17.738 hybrid contribution 0.206 0.328 0.011 0.388 sum -16.805 5.355 0.036 17.637 Atomic orbital electron populations 1.20696 0.87333 1.04122 1.03688 1.23050 0.99202 0.90689 0.94255 1.22265 0.94309 0.99946 0.99029 1.22484 0.94896 0.99504 0.92613 1.23268 0.97551 0.91624 0.99097 1.17611 0.84440 0.85205 0.79284 1.90756 1.63267 1.36269 1.52064 1.46451 1.11144 1.06574 1.68746 1.19274 0.72382 0.97641 0.98142 1.21270 0.92545 0.91192 1.53087 0.91526 1.24950 0.96160 0.98286 0.94613 1.69989 1.00730 1.32627 1.49052 0.86327 0.78681 0.84038 0.77711 1.19474 1.20793 1.20788 1.73260 0.99392 1.26336 1.06248 1.73090 1.01304 1.24547 1.09926 0.89716 0.90204 0.89795 0.82837 0.82004 0.76195 0.94980 0.94974 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.19 36.01 0.37 -0.32 15 2 C 0.07 0.81 6.87 -82.32 -0.57 0.24 15 3 C -0.13 -1.29 9.86 -39.24 -0.39 -1.68 15 4 C -0.07 -0.88 9.73 -38.81 -0.38 -1.26 15 5 C 0.03 0.54 6.83 -82.83 -0.57 -0.02 15 6 C 0.55 11.78 7.82 -12.19 -0.10 11.68 15 7 O -0.55 -12.96 16.39 5.36 0.09 -12.88 15 8 N -0.68 -15.46 5.54 -62.33 -0.35 -15.81 15 9 C 0.25 6.62 5.43 -5.19 -0.03 6.59 15 10 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 15 11 H 0.07 1.76 7.60 -52.49 -0.40 1.36 15 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 13 N -0.89 -26.17 13.29 55.43 0.74 -25.43 15 14 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 15 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 18 N -0.21 -3.60 10.75 33.32 0.36 -3.24 15 19 N -0.24 -3.72 11.43 33.63 0.38 -3.33 15 20 H 0.08 0.48 8.14 -51.94 -0.42 0.06 15 21 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 15 22 H 0.08 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.15 0.92 8.06 -52.49 -0.42 0.49 15 24 H 0.16 1.97 7.72 -52.49 -0.41 1.57 15 25 H 0.40 8.48 7.68 -40.82 -0.31 8.17 15 26 H 0.03 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.03 0.94 8.14 -51.93 -0.42 0.51 15 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -32.59 259.73 -4.74 -37.33 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -2.79 Total: 1.72 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.07 Total: 1.55 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 1.13 Total: -47.81 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.59 -4.74 -37.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.380 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds