Wall clock time and date at job start Mon Mar 30 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38568 * 119.97063 * 2 1 4 4 C 1.38819 * 118.07134 * 180.02562 * 3 2 1 5 5 C 1.39721 * 117.89886 * 359.97438 * 4 3 2 6 6 C 1.48155 * 120.18118 * 179.97438 * 5 4 3 7 7 O 1.21507 * 120.00127 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99417 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99187 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46512 * 180.02562 * 9 8 6 11 11 H 1.07996 * 120.00253 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00048 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99598 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00315 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47185 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47143 * 119.99557 * 14 12 10 17 17 H 1.48499 * 109.47127 * 239.99733 * 14 12 10 18 18 N 1.32780 * 119.63339 * 0.02562 * 5 4 3 19 19 N 1.28350 * 122.02809 * 0.02562 * 18 5 4 20 20 H 1.08989 * 109.47046 * 269.98045 * 1 2 3 21 21 H 1.09003 * 109.46799 * 29.97980 * 1 2 3 22 22 H 1.09006 * 109.47092 * 149.97641 * 1 2 3 23 23 H 1.07998 * 120.96440 * 359.97438 * 3 2 1 24 24 H 1.08000 * 121.05109 * 179.97438 * 4 3 2 25 25 H 0.96994 * 120.00291 * 0.02562 * 8 6 5 26 26 H 1.08995 * 109.47880 * 300.00107 * 9 8 6 27 27 H 1.08994 * 109.46915 * 60.00815 * 9 8 6 28 28 H 0.97004 * 119.99494 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2004 0.0000 4 6 3.5867 1.1544 -0.0005 5 6 4.1992 -0.1014 -0.0005 6 6 5.6768 -0.2095 -0.0017 7 8 6.3594 0.7957 -0.0031 8 7 6.2636 -1.4228 -0.0011 9 6 7.7248 -1.5296 -0.0028 10 6 8.1221 -2.9833 -0.0024 11 1 7.3623 -3.7508 -0.0014 12 6 9.4556 -3.3335 -0.0032 13 7 10.3809 -2.3988 -0.0049 14 14 9.9482 -5.1354 -0.0035 15 1 8.7282 -5.9820 -0.0032 16 1 10.7531 -5.4284 -1.2166 17 1 10.7548 -5.4282 1.2085 18 7 3.4496 -1.1974 -0.0005 19 7 2.1672 -1.1451 -0.0010 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6746 2.1444 -0.0004 24 1 4.1741 2.0607 -0.0010 25 1 5.7187 -2.2252 -0.0003 26 1 8.1236 -1.0446 -0.8937 27 1 8.1256 -1.0428 0.8862 28 1 11.3192 -2.6452 -0.0059 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:10 Heat of formation + Delta-G solvation = -15.077031 kcal Electronic energy + Delta-G solvation = -13959.228461 eV Core-core repulsion = 11395.399557 eV Total energy + Delta-G solvation = -2563.828904 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.26887 -40.33892 -36.33367 -35.14292 -34.31377 -34.13333 -30.17405 -28.77158 -26.26966 -25.04692 -23.87847 -22.00595 -19.90744 -18.58274 -18.04069 -16.98632 -16.78203 -16.57711 -16.29845 -15.79162 -15.42993 -14.59455 -14.20994 -14.12920 -14.04310 -13.62707 -13.18961 -12.95005 -12.76740 -12.57144 -12.24928 -11.51464 -11.34996 -11.16220 -10.86158 -10.83204 -10.81223 -9.97001 -8.32275 -6.48548 -0.62147 -0.28206 1.42184 1.43131 1.57334 1.57855 2.08882 2.39103 2.54703 2.82769 3.02576 3.33994 3.54408 3.74990 3.88471 4.01226 4.56786 4.68943 4.80745 4.97431 5.00869 5.06414 5.16980 5.33692 5.36114 5.57859 5.78481 6.58061 6.65994 7.09471 7.26386 7.48463 8.80016 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053713 B = 0.005589 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.168391 B = 5008.696991 C = 5509.419701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.078 3.922 3 C -0.098 4.098 4 C -0.072 4.072 5 C 0.006 3.994 6 C 0.556 3.444 7 O -0.578 6.578 8 N -0.686 5.686 9 C 0.263 3.737 10 C -0.560 4.560 11 H 0.078 0.922 12 C 0.008 3.992 13 N -0.927 5.927 14 Si 0.985 3.015 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.275 1.275 18 N -0.233 5.233 19 N -0.273 5.273 20 H 0.103 0.897 21 H 0.115 0.885 22 H 0.081 0.919 23 H 0.210 0.790 24 H 0.171 0.829 25 H 0.411 0.589 26 H -0.001 1.001 27 H -0.001 1.001 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.517 5.949 0.039 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.101 4.101 5 C -0.141 4.141 6 C 0.339 3.661 7 O -0.458 6.458 8 N -0.334 5.334 9 C 0.141 3.859 10 C -0.598 4.598 11 H 0.096 0.904 12 C -0.192 4.192 13 N -0.565 5.565 14 Si 0.808 3.192 15 H -0.181 1.181 16 H -0.201 1.201 17 H -0.201 1.201 18 N -0.079 5.079 19 N -0.118 5.118 20 H 0.121 0.879 21 H 0.134 0.866 22 H 0.100 0.900 23 H 0.227 0.773 24 H 0.189 0.811 25 H 0.247 0.753 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.844 5.001 0.035 20.464 hybrid contribution 0.884 0.457 0.010 0.995 sum -18.960 5.459 0.045 19.730 Atomic orbital electron populations 1.20922 0.83621 1.05842 1.05281 1.23893 1.01434 0.89965 0.91206 1.22842 0.92562 1.01792 0.95468 1.22688 0.96731 0.98068 0.92587 1.22671 0.94774 0.93734 1.02926 1.18179 0.86542 0.83965 0.77381 1.90714 1.64887 1.37042 1.53132 1.46217 1.09439 1.07826 1.69931 1.18743 0.74889 0.97199 0.95027 1.21602 0.93348 0.91485 1.53351 0.90367 1.26021 0.95977 1.03587 0.93654 1.70126 1.01332 1.35362 1.49694 0.85104 0.78610 0.77560 0.77928 1.18137 1.20106 1.20089 1.73163 1.00710 1.26823 1.07179 1.73034 1.00227 1.26917 1.11583 0.87865 0.86626 0.89997 0.77299 0.81115 0.75274 0.98292 0.98283 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.19 71.24 0.73 -0.15 15 2 C 0.08 1.50 6.87 42.59 0.29 1.79 15 3 C -0.10 -1.59 9.86 22.49 0.22 -1.37 15 4 C -0.07 -1.82 9.73 22.77 0.22 -1.60 15 5 C 0.01 0.20 6.83 42.00 0.29 0.49 15 6 C 0.56 24.76 7.82 86.88 0.68 25.44 15 7 O -0.58 -28.86 16.39 -3.74 -0.06 -28.92 15 8 N -0.69 -32.77 5.54 -469.41 -2.60 -35.37 15 9 C 0.26 15.04 5.43 85.63 0.46 15.50 15 10 C -0.56 -31.92 9.28 25.60 0.24 -31.68 15 11 H 0.08 4.17 7.60 -2.91 -0.02 4.15 15 12 C 0.01 0.43 5.46 84.65 0.46 0.89 15 13 N -0.93 -56.28 13.29 21.45 0.28 -56.00 15 14 Si 0.99 43.63 29.54 68.60 2.03 45.65 15 15 H -0.26 -10.80 7.11 99.48 0.71 -10.10 15 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 18 N -0.23 -8.15 10.75 -48.49 -0.52 -8.67 15 19 N -0.27 -7.95 11.43 -47.53 -0.54 -8.49 15 20 H 0.10 0.65 8.14 -2.39 -0.02 0.64 15 21 H 0.12 0.28 8.09 -2.39 -0.02 0.26 15 22 H 0.08 0.83 8.14 -2.38 -0.02 0.82 15 23 H 0.21 1.05 8.06 -2.91 -0.02 1.03 15 24 H 0.17 3.93 7.72 -2.91 -0.02 3.91 15 25 H 0.41 18.09 7.68 -92.71 -0.71 17.38 15 26 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 27 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 Total: -1.00 -75.05 259.73 2.65 -72.40 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.47 Total: 10.08 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 3.59 Total: 9.32 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -3.38 Total: -108.53 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.06 Total: -28.92 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.05 2.65 -72.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.324 kcal (2) G-P(sol) polarization free energy of solvation -75.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds