Wall clock time and date at job start Mon Mar 30 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32467 * 120.56508 * 2 1 4 4 C 1.32534 * 120.78668 * 179.97438 * 3 2 1 5 5 N 1.38442 * 119.12976 * 179.97438 * 4 3 2 6 6 C 1.36979 * 120.00435 * 0.02562 * 5 4 3 7 7 H 1.08005 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.38829 * 120.00565 * 179.97438 * 6 5 4 9 9 N 1.31546 * 119.99683 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00477 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46976 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47075 * 120.00398 * 10 8 6 13 13 H 1.48505 * 109.47078 * 240.00147 * 10 8 6 14 14 N 1.32718 * 121.73226 * 359.97438 * 4 3 2 15 15 C 1.31788 * 120.45836 * 0.03952 * 14 4 3 16 16 C 1.38077 * 120.56698 * 179.97438 * 2 1 3 17 17 C 1.50793 * 133.73797 * 0.03091 * 16 2 1 18 18 O 1.44007 * 106.01384 * 162.41115 * 17 16 2 19 19 C 1.44155 * 104.93084 * 28.27186 * 18 17 16 20 20 H 1.08994 * 109.47812 * 270.02517 * 1 2 3 21 21 H 1.09002 * 109.47038 * 30.03089 * 1 2 3 22 22 H 1.08998 * 109.47026 * 150.02442 * 1 2 3 23 23 H 0.97001 * 119.99659 * 180.02562 * 5 4 3 24 24 H 0.96999 * 120.00464 * 179.97438 * 9 8 6 25 25 H 1.09002 * 110.15692 * 281.56999 * 17 16 2 26 26 H 1.09004 * 110.15516 * 43.25878 * 17 16 2 27 27 H 1.09008 * 110.12907 * 212.57532 * 19 18 17 28 28 H 1.08998 * 110.14719 * 90.85310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1806 1.1406 0.0000 4 6 3.5059 1.1457 0.0005 5 7 4.1751 2.3577 0.0000 6 6 3.4678 3.5307 -0.0006 7 1 2.3880 3.5102 -0.0002 8 6 4.1389 4.7460 -0.0006 9 7 5.4542 4.7711 -0.0006 10 14 3.1744 6.3457 -0.0006 11 1 1.7198 6.0467 -0.0012 12 1 3.5183 7.1312 1.2118 13 1 3.5182 7.1311 -1.2132 14 7 4.2083 0.0197 0.0015 15 6 3.5980 -1.1484 0.0013 16 6 2.2091 -1.1889 0.0005 17 6 1.8012 -2.6406 0.0006 18 8 2.9642 -3.3801 -0.4170 19 6 4.0854 -2.5767 0.0021 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5134 23 1 5.1450 2.3761 -0.0001 24 1 5.9231 5.6201 -0.0010 25 1 1.5016 -2.9465 1.0030 26 1 0.9825 -2.8007 -0.7010 27 1 4.9122 -2.6917 -0.6990 28 1 4.4000 -2.8654 1.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074908.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:14 Heat of formation + Delta-G solvation = 14.769316 kcal Electronic energy + Delta-G solvation = -14536.747469 eV Core-core repulsion = 11974.212801 eV Total energy + Delta-G solvation = -2562.534669 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55063 -38.04218 -35.39654 -33.52937 -32.18657 -30.25249 -28.20748 -28.07159 -25.19478 -23.53401 -21.41803 -20.76506 -18.29716 -16.82463 -16.59729 -15.93543 -15.36922 -14.68901 -14.10778 -14.07147 -13.69638 -13.04416 -12.67673 -12.61175 -12.24865 -12.15910 -11.74686 -11.61774 -11.37620 -10.64125 -10.59020 -10.45000 -9.92940 -9.63850 -9.39337 -8.82298 -8.04739 -7.34904 -6.74985 -3.93683 1.98594 2.12796 3.08399 3.10946 3.17502 3.81803 4.22290 4.26676 4.51342 4.73977 5.11644 5.19979 5.34431 5.53718 5.64536 5.77741 5.82643 5.93134 5.97833 6.10923 6.21998 6.44613 6.63516 6.93242 7.17318 7.31905 7.69867 8.11722 8.49747 8.89034 9.11007 9.70218 10.40645 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048052 B = 0.007392 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.558113 B = 3786.717824 C = 4336.675795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.251 3.749 3 N -0.569 5.569 4 C 0.496 3.504 5 N -0.492 5.492 6 C -0.281 4.281 7 H 0.119 0.881 8 C 0.020 3.980 9 N -0.881 5.881 10 Si 0.943 3.057 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.578 5.578 15 C 0.188 3.812 16 C -0.396 4.396 17 C 0.128 3.872 18 O -0.368 6.368 19 C 0.108 3.892 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.412 0.588 24 H 0.279 0.721 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 -8.118 0.689 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 N -0.296 5.296 4 C 0.142 3.858 5 N -0.101 5.101 6 C -0.412 4.412 7 H 0.136 0.864 8 C -0.185 4.185 9 N -0.517 5.517 10 Si 0.768 3.232 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.203 1.203 14 N -0.305 5.305 15 C 0.031 3.969 16 C -0.411 4.411 17 C 0.051 3.949 18 O -0.286 6.286 19 C 0.030 3.970 20 H 0.094 0.906 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.249 0.751 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.243 -6.805 0.573 8.609 hybrid contribution -0.193 0.318 0.136 0.396 sum -5.435 -6.487 0.709 8.493 Atomic orbital electron populations 1.20647 0.89629 1.02823 1.02592 1.20343 0.95726 0.86393 0.87787 1.67851 1.07686 1.28175 1.25879 1.18944 0.85032 0.85559 0.96311 1.40603 1.08813 1.00606 1.60028 1.20114 0.93807 0.81380 1.45925 0.86357 1.25520 0.95964 1.00324 0.96687 1.69699 1.06844 1.28517 1.46600 0.85589 0.79704 0.79832 0.78061 1.18704 1.20346 1.20344 1.66737 1.41073 0.96772 1.25893 1.21734 0.91510 0.93558 0.90083 1.21240 0.96941 0.96344 1.26531 1.21065 0.88233 0.86685 0.98922 1.89071 1.15248 1.43067 1.81195 1.21458 0.90034 0.84379 1.01118 0.90617 0.90645 0.91152 0.75067 0.91098 0.92447 0.90180 0.88145 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.16 36.00 0.37 -1.10 15 2 C 0.25 5.02 6.82 -82.38 -0.56 4.46 15 3 N -0.57 -13.63 9.04 -10.18 -0.09 -13.73 15 4 C 0.50 12.53 8.38 -322.41 -2.70 9.83 15 5 N -0.49 -12.94 5.43 -12.74 -0.07 -13.01 15 6 C -0.28 -7.45 9.69 -15.03 -0.15 -7.60 15 7 H 0.12 3.15 7.04 -52.48 -0.37 2.78 15 8 C 0.02 0.52 5.50 -17.46 -0.10 0.43 15 9 N -0.88 -23.30 13.05 55.49 0.72 -22.57 15 10 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 15 11 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 12 H -0.28 -5.76 7.11 56.52 0.40 -5.35 15 13 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 14 N -0.58 -13.66 10.46 -10.03 -0.10 -13.77 15 15 C 0.19 3.83 7.56 -82.24 -0.62 3.21 15 16 C -0.40 -7.55 6.15 -104.37 -0.64 -8.19 15 17 C 0.13 1.94 7.36 36.05 0.27 2.21 15 18 O -0.37 -5.92 11.73 -35.23 -0.41 -6.33 15 19 C 0.11 1.72 7.63 36.12 0.28 1.99 15 20 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.07 0.84 7.74 -51.93 -0.40 0.44 15 23 H 0.41 10.94 8.01 -40.82 -0.33 10.62 15 24 H 0.28 6.87 8.31 -40.82 -0.34 6.54 15 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.08 1.06 7.95 -51.93 -0.41 0.64 15 27 H 0.10 1.45 8.14 -51.92 -0.42 1.03 15 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 LS Contribution 249.59 15.07 3.76 3.76 Total: -1.00 -29.19 249.59 -7.84 -37.03 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -2.76 Total: 8.63 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -3.86 Total: 5.24 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.46 Total: -63.08 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.41 Total: -6.33 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.19 -7.84 -37.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074908.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.800 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds