Wall clock time and date at job start Mon Mar 30 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32467 * 120.56508 * 2 1 4 4 C 1.32534 * 120.78668 * 179.97438 * 3 2 1 5 5 N 1.38442 * 119.12976 * 179.97438 * 4 3 2 6 6 C 1.36979 * 120.00435 * 0.02562 * 5 4 3 7 7 H 1.08005 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.38829 * 120.00565 * 179.97438 * 6 5 4 9 9 N 1.31546 * 119.99683 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00477 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46976 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47075 * 120.00398 * 10 8 6 13 13 H 1.48505 * 109.47078 * 240.00147 * 10 8 6 14 14 N 1.32718 * 121.73226 * 359.97438 * 4 3 2 15 15 C 1.31788 * 120.45836 * 0.03952 * 14 4 3 16 16 C 1.38077 * 120.56698 * 179.97438 * 2 1 3 17 17 C 1.50793 * 133.73797 * 0.03091 * 16 2 1 18 18 O 1.44007 * 106.01384 * 162.41115 * 17 16 2 19 19 C 1.44155 * 104.93084 * 28.27186 * 18 17 16 20 20 H 1.08994 * 109.47812 * 270.02517 * 1 2 3 21 21 H 1.09002 * 109.47038 * 30.03089 * 1 2 3 22 22 H 1.08998 * 109.47026 * 150.02442 * 1 2 3 23 23 H 0.97001 * 119.99659 * 180.02562 * 5 4 3 24 24 H 0.96999 * 120.00464 * 179.97438 * 9 8 6 25 25 H 1.09002 * 110.15692 * 281.56999 * 17 16 2 26 26 H 1.09004 * 110.15516 * 43.25878 * 17 16 2 27 27 H 1.09008 * 110.12907 * 212.57532 * 19 18 17 28 28 H 1.08998 * 110.14719 * 90.85310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1806 1.1406 0.0000 4 6 3.5059 1.1457 0.0005 5 7 4.1751 2.3577 0.0000 6 6 3.4678 3.5307 -0.0006 7 1 2.3880 3.5102 -0.0002 8 6 4.1389 4.7460 -0.0006 9 7 5.4542 4.7711 -0.0006 10 14 3.1744 6.3457 -0.0006 11 1 1.7198 6.0467 -0.0012 12 1 3.5183 7.1312 1.2118 13 1 3.5182 7.1311 -1.2132 14 7 4.2083 0.0197 0.0015 15 6 3.5980 -1.1484 0.0013 16 6 2.2091 -1.1889 0.0005 17 6 1.8012 -2.6406 0.0006 18 8 2.9642 -3.3801 -0.4170 19 6 4.0854 -2.5767 0.0021 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5134 23 1 5.1450 2.3761 -0.0001 24 1 5.9231 5.6201 -0.0010 25 1 1.5016 -2.9465 1.0030 26 1 0.9825 -2.8007 -0.7010 27 1 4.9122 -2.6917 -0.6990 28 1 4.4000 -2.8654 1.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074908.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:14 Heat of formation + Delta-G solvation = -4.199272 kcal Electronic energy + Delta-G solvation = -14537.570009 eV Core-core repulsion = 11974.212801 eV Total energy + Delta-G solvation = -2563.357209 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.16140 -39.53980 -37.14417 -35.16482 -33.96230 -31.91656 -29.66898 -29.38406 -27.01634 -24.99786 -23.11548 -22.29490 -20.06615 -18.51075 -18.30928 -17.27824 -16.81799 -16.41311 -15.74142 -15.57090 -15.44459 -14.39576 -14.09493 -14.03102 -13.63679 -13.49393 -13.38154 -13.07634 -12.90144 -12.51650 -12.22792 -12.08191 -11.54330 -11.25485 -10.94888 -10.48714 -9.78425 -9.06998 -8.60374 -5.90887 0.32274 0.47729 1.39769 1.44699 1.55839 2.12178 2.53649 2.74974 2.98823 3.15497 3.29243 3.78771 3.83333 4.09246 4.42978 4.57208 4.63569 4.67078 4.72924 4.82278 4.85435 5.07472 5.12006 5.30367 5.54674 5.66571 5.91003 6.41273 6.61355 7.05683 7.25065 7.87340 8.57732 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048052 B = 0.007392 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.558113 B = 3786.717824 C = 4336.675795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.231 3.769 3 N -0.599 5.599 4 C 0.492 3.508 5 N -0.522 5.522 6 C -0.306 4.306 7 H 0.108 0.892 8 C -0.023 4.023 9 N -0.921 5.921 10 Si 1.010 2.990 11 H -0.259 1.259 12 H -0.272 1.272 13 H -0.273 1.273 14 N -0.604 5.604 15 C 0.162 3.838 16 C -0.380 4.380 17 C 0.130 3.870 18 O -0.369 6.369 19 C 0.114 3.886 20 H 0.096 0.904 21 H 0.071 0.929 22 H 0.105 0.895 23 H 0.403 0.597 24 H 0.281 0.719 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 -10.217 0.840 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 N -0.327 5.327 4 C 0.137 3.863 5 N -0.134 5.134 6 C -0.437 4.437 7 H 0.126 0.874 8 C -0.224 4.224 9 N -0.559 5.559 10 Si 0.832 3.168 11 H -0.183 1.183 12 H -0.197 1.197 13 H -0.198 1.198 14 N -0.332 5.332 15 C 0.008 3.992 16 C -0.393 4.393 17 C 0.053 3.947 18 O -0.287 6.287 19 C 0.036 3.964 20 H 0.115 0.885 21 H 0.090 0.910 22 H 0.124 0.876 23 H 0.238 0.762 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.361 -9.017 0.724 11.663 hybrid contribution 0.314 0.560 0.093 0.649 sum -7.047 -8.457 0.817 11.039 Atomic orbital electron populations 1.20801 0.85591 1.04414 1.04348 1.21317 0.98332 0.85771 0.86440 1.67933 1.07297 1.30485 1.26981 1.19340 0.85897 0.85941 0.95079 1.40556 1.08207 1.01051 1.63573 1.20139 0.93435 0.82243 1.47854 0.87391 1.26390 0.96850 1.03027 0.96133 1.69791 1.08160 1.29211 1.48752 0.84608 0.78324 0.75663 0.78179 1.18303 1.19732 1.19799 1.66797 1.41724 0.97517 1.27138 1.22703 0.92990 0.94484 0.89026 1.21939 0.96560 0.98513 1.22259 1.21333 0.88558 0.83288 1.01550 1.89087 1.15431 1.42713 1.81506 1.21641 0.90332 0.81307 1.03108 0.88546 0.91013 0.87617 0.76168 0.90948 0.89519 0.87223 0.86725 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.45 10.16 71.23 0.72 -1.73 15 2 C 0.23 8.83 6.82 42.42 0.29 9.12 15 3 N -0.60 -28.92 9.04 -186.11 -1.68 -30.60 15 4 C 0.49 25.60 8.38 261.35 2.19 27.79 15 5 N -0.52 -28.93 5.43 -194.22 -1.05 -29.98 15 6 C -0.31 -17.02 9.69 84.03 0.81 -16.21 15 7 H 0.11 6.02 7.04 -2.91 -0.02 6.00 15 8 C -0.02 -1.24 5.50 84.88 0.47 -0.77 15 9 N -0.92 -50.89 13.05 21.65 0.28 -50.61 15 10 Si 1.01 41.60 29.55 68.60 2.03 43.62 15 11 H -0.26 -10.32 7.11 99.48 0.71 -9.62 15 12 H -0.27 -10.81 7.11 99.48 0.71 -10.11 15 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 14 N -0.60 -28.86 10.46 -185.65 -1.94 -30.80 15 15 C 0.16 6.33 7.56 42.81 0.32 6.66 15 16 C -0.38 -13.35 6.15 -19.70 -0.12 -13.47 15 17 C 0.13 3.26 7.36 71.27 0.52 3.78 15 18 O -0.37 -10.22 11.73 -148.98 -1.75 -11.97 15 19 C 0.11 3.25 7.63 71.31 0.54 3.79 15 20 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.11 1.99 7.74 -2.39 -0.02 1.97 15 23 H 0.40 22.86 8.01 -92.71 -0.74 22.12 15 24 H 0.28 14.40 8.31 -92.71 -0.77 13.62 15 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 26 H 0.11 2.21 7.95 -2.38 -0.02 2.19 15 27 H 0.11 2.99 8.14 -2.38 -0.02 2.97 15 28 H 0.11 2.59 8.14 -2.39 -0.02 2.57 15 Total: -1.00 -66.08 249.59 2.09 -63.99 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.45 Total: 27.40 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 5.75 Total: 18.96 kcal Atomic # 7 Polarization: -137.60 SS G_CDS: -4.40 Total: -142.00 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.75 Total: -11.97 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -66.08 2.09 -63.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074908.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.788 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds