Wall clock time and date at job start Mon Mar 30 2020 03:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38617 * 120.95863 * 2 1 4 4 N 1.32163 * 120.08273 * 179.97438 * 3 2 1 5 5 N 1.28348 * 122.30971 * 0.02562 * 4 3 2 6 6 C 1.32852 * 122.02037 * 0.02562 * 5 4 3 7 7 C 1.47987 * 120.19312 * 179.97438 * 6 5 4 8 8 O 1.21565 * 120.00102 * 174.44548 * 7 6 5 9 9 N 1.34778 * 120.00020 * 354.71247 * 7 6 5 10 10 C 1.46502 * 120.00096 * 4.25776 * 9 7 6 11 11 C 1.36795 * 120.00054 * 184.25213 * 9 7 6 12 12 H 1.07997 * 120.00120 * 25.00659 * 11 9 7 13 13 C 1.39108 * 119.99951 * 205.00447 * 11 9 7 14 14 N 1.31320 * 120.00110 * 219.22134 * 13 11 9 15 15 Si 1.86800 * 119.99844 * 39.22050 * 13 11 9 16 16 H 1.48504 * 109.47214 * 94.53633 * 15 13 11 17 17 H 1.48501 * 109.47292 * 214.53410 * 15 13 11 18 18 H 1.48498 * 109.47446 * 334.53441 * 15 13 11 19 19 C 1.38776 * 120.96441 * 180.29496 * 2 1 3 20 20 H 1.09000 * 109.47047 * 90.00243 * 1 2 3 21 21 H 1.09004 * 109.46694 * 209.99822 * 1 2 3 22 22 H 1.08997 * 109.47382 * 330.00344 * 1 2 3 23 23 H 1.07997 * 119.95512 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.46788 * 60.93999 * 10 9 7 25 25 H 1.08999 * 109.47232 * 180.93783 * 10 9 7 26 26 H 1.09001 * 109.46707 * 300.94515 * 10 9 7 27 27 H 0.96994 * 119.99846 * 180.02562 * 14 13 11 28 28 H 1.07997 * 121.05653 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2201 1.1887 0.0000 4 7 3.5415 1.1685 0.0005 5 7 4.2109 0.0734 0.0005 6 6 3.6171 -1.1151 -0.0005 7 6 4.4288 -2.3525 -0.0010 8 8 3.8859 -3.4356 0.1000 9 7 5.7703 -2.2785 -0.1080 10 6 6.4324 -0.9719 -0.1298 11 6 6.5136 -3.4235 -0.1961 12 1 6.0669 -4.3293 -0.5786 13 6 7.8450 -3.4211 0.2070 14 7 8.7407 -4.0905 -0.4815 15 14 8.3587 -2.4658 1.7279 16 1 8.3630 -3.3724 2.9040 17 1 9.7209 -1.9098 1.5266 18 1 7.4006 -1.3556 1.9622 19 6 2.2210 -1.1900 -0.0061 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6951 2.1325 0.0004 24 1 6.2258 -0.4443 0.8013 25 1 7.5081 -1.1113 -0.2374 26 1 6.0559 -0.3878 -0.9696 27 1 9.6690 -4.0891 -0.2002 28 1 1.7143 -2.1437 -0.0106 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260101014.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:48 Heat of formation + Delta-G solvation = 24.118631 kcal Electronic energy + Delta-G solvation = -14719.145726 eV Core-core repulsion = 12157.016474 eV Total energy + Delta-G solvation = -2562.129252 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.15486 -40.17171 -36.95794 -35.45317 -34.40438 -33.46033 -29.18007 -28.33959 -27.61001 -25.37495 -24.31657 -21.30358 -19.33096 -18.86915 -17.75484 -17.41331 -17.36234 -16.60160 -16.01869 -15.49387 -14.84049 -14.58433 -14.36773 -14.10217 -13.93610 -13.92326 -13.65533 -13.15880 -12.71786 -12.60614 -11.96896 -11.71440 -11.16895 -11.05728 -10.69621 -10.68816 -10.58675 -9.99068 -8.79259 -6.07476 -0.46338 -0.20901 1.20619 1.31958 1.43736 1.79396 2.10682 2.38847 2.59772 2.86008 3.10025 3.53205 3.60572 3.74967 3.91683 4.12113 4.44412 4.57158 4.71431 4.81241 4.86948 4.93089 5.03585 5.10834 5.31057 5.38285 5.90676 6.30748 6.75941 7.12734 7.57589 7.74057 8.35317 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048678 B = 0.008430 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.064555 B = 3320.534872 C = 3650.096119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.069 4.069 3 C 0.047 3.953 4 N -0.269 5.269 5 N -0.251 5.251 6 C 0.035 3.965 7 C 0.466 3.534 8 O -0.617 6.617 9 N -0.427 5.427 10 C 0.092 3.908 11 C -0.366 4.366 12 H 0.062 0.938 13 C 0.044 3.956 14 N -0.851 5.851 15 Si 0.921 3.079 16 H -0.279 1.279 17 H -0.254 1.254 18 H -0.239 1.239 19 C -0.096 4.096 20 H 0.099 0.901 21 H 0.080 0.920 22 H 0.107 0.893 23 H 0.220 0.780 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.291 0.709 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 13.297 2.211 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.118 4.118 4 N -0.110 5.110 5 N -0.098 5.098 6 C -0.110 4.110 7 C 0.256 3.744 8 O -0.505 6.505 9 N -0.143 5.143 10 C -0.050 4.050 11 C -0.493 4.493 12 H 0.080 0.920 13 C -0.167 4.167 14 N -0.483 5.483 15 Si 0.741 3.259 16 H -0.205 1.205 17 H -0.178 1.178 18 H -0.162 1.162 19 C -0.126 4.126 20 H 0.118 0.882 21 H 0.099 0.901 22 H 0.126 0.874 23 H 0.236 0.764 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.259 13.546 2.187 17.749 hybrid contribution -0.542 -1.282 0.422 1.454 sum -11.802 12.264 2.609 17.219 Atomic orbital electron populations 1.20951 0.85075 1.05576 1.04871 1.21617 1.00713 0.91613 0.94084 1.25026 0.91507 1.00962 0.94284 1.72987 1.09111 1.19278 1.09621 1.73635 1.31302 0.94736 1.10125 1.22791 0.94486 0.94039 0.99674 1.17900 0.82812 0.87594 0.86098 1.90579 1.71803 1.29748 1.58355 1.43763 1.05071 1.06926 1.58541 1.22273 0.96680 0.83275 1.02807 1.18766 0.93214 0.91387 1.45968 0.92015 1.25945 0.94088 0.97600 0.99027 1.70000 1.03248 1.40311 1.34786 0.86320 0.79519 0.80182 0.79892 1.20497 1.17841 1.16239 1.22408 0.92403 1.01651 0.96112 0.88248 0.90095 0.87447 0.76387 0.90931 0.91980 0.90623 0.89851 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.07 71.24 0.72 -0.49 15 2 C -0.07 -1.52 5.92 -19.65 -0.12 -1.64 15 3 C 0.05 1.03 11.02 84.73 0.93 1.97 15 4 N -0.27 -8.61 11.51 -57.13 -0.66 -9.26 15 5 N -0.25 -9.81 7.21 -48.51 -0.35 -10.16 15 6 C 0.04 1.47 6.75 41.96 0.28 1.75 15 7 C 0.47 24.48 7.61 86.83 0.66 25.14 15 8 O -0.62 -36.25 16.16 -3.92 -0.06 -36.32 15 9 N -0.43 -22.98 2.75 -662.06 -1.82 -24.80 15 10 C 0.09 4.16 6.89 127.77 0.88 5.04 15 11 C -0.37 -22.09 9.41 84.13 0.79 -21.29 15 12 H 0.06 4.24 7.70 -2.91 -0.02 4.22 15 13 C 0.04 2.42 4.75 84.98 0.40 2.83 15 14 N -0.85 -48.31 13.95 21.69 0.30 -48.01 15 15 Si 0.92 41.26 26.40 68.60 1.81 43.07 15 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 17 H -0.25 -10.39 7.11 99.48 0.71 -9.68 15 18 H -0.24 -10.29 5.20 99.48 0.52 -9.77 15 19 C -0.10 -3.13 9.45 22.78 0.22 -2.91 15 20 H 0.10 0.86 8.14 -2.39 -0.02 0.84 15 21 H 0.08 0.91 8.11 -2.38 -0.02 0.89 15 22 H 0.11 0.61 8.11 -2.39 -0.02 0.59 15 23 H 0.22 2.43 8.06 -2.91 -0.02 2.40 15 24 H 0.07 3.11 6.17 -2.39 -0.01 3.10 15 25 H 0.06 2.74 5.18 -2.39 -0.01 2.73 15 26 H 0.08 3.20 6.89 -2.39 -0.02 3.19 15 27 H 0.29 14.80 8.31 -92.71 -0.77 14.03 15 28 H 0.16 4.93 7.73 -2.91 -0.02 4.91 15 Total: -1.00 -74.51 243.65 4.98 -69.53 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.99 Total: 5.56 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 4.77 Total: 10.39 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -2.53 Total: -92.23 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.06 Total: -36.32 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.81 Total: 43.07 kcal Total: -74.51 4.98 -69.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260101014.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.651 kcal (2) G-P(sol) polarization free energy of solvation -74.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds