Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48499 * 109.47254 * 270.00575 * 3 2 1 5 5 H 1.48501 * 109.46819 * 30.00380 * 3 2 1 6 6 H 1.48497 * 109.46777 * 150.00073 * 3 2 1 7 7 C 1.37877 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00177 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.38408 * 119.99812 * 180.02562 * 10 9 7 12 12 N 1.32514 * 119.13541 * 359.97438 * 11 10 9 13 13 C 1.32474 * 120.78340 * 179.97438 * 12 11 10 14 14 C 1.38069 * 118.86758 * 0.02562 * 13 12 11 15 15 C 1.38836 * 118.89965 * 359.97438 * 14 13 12 16 16 N 1.31858 * 119.25917 * 0.02562 * 15 14 13 17 17 C 1.50934 * 107.19055 * 180.02562 * 15 14 13 18 18 O 1.43990 * 105.99988 * 17.58083 * 17 15 14 19 19 C 1.44001 * 105.00995 * 331.73395 * 18 17 15 20 20 H 0.96998 * 119.99866 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46968 * 60.00204 * 9 7 2 22 22 H 1.09000 * 109.47194 * 299.99842 * 9 7 2 23 23 H 0.96998 * 119.99733 * 359.97438 * 10 9 7 24 24 H 1.08001 * 120.56609 * 179.73281 * 13 12 11 25 25 H 1.08990 * 110.14937 * 136.71378 * 17 15 14 26 26 H 1.09001 * 110.14371 * 258.38525 * 17 15 14 27 27 H 1.09002 * 110.15592 * 147.35379 * 19 18 17 28 28 H 1.09000 * 110.16035 * 269.04943 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7418 -4.9176 -0.0011 12 7 0.4354 -5.1400 -0.0011 13 6 -0.0419 -6.3758 -0.0021 14 6 0.8458 -7.4333 -0.0026 15 6 2.2081 -7.1657 -0.0026 16 7 2.6188 -5.9127 -0.0016 17 6 2.9238 -8.4946 -0.0039 18 8 1.9502 -9.4693 -0.4226 19 6 0.6812 -8.9323 -0.0043 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 3.1568 -3.4354 -0.0009 24 1 -1.1073 -6.5531 0.0023 25 1 3.7574 -8.4714 -0.7055 26 1 3.2833 -8.7283 0.9982 27 1 -0.0998 -9.2235 -0.7068 28 1 0.4357 -9.2854 0.9973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260107121.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = 18.444720 kcal Electronic energy + Delta-G solvation = -14171.023874 eV Core-core repulsion = 11608.648583 eV Total energy + Delta-G solvation = -2562.375291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.17237 -38.54838 -35.24738 -33.40576 -32.74073 -30.85763 -28.65711 -27.03023 -25.14269 -23.16482 -22.11746 -21.26225 -18.17253 -17.29792 -16.42524 -16.24953 -15.72060 -14.88582 -14.58854 -14.55411 -13.59325 -13.45356 -13.20201 -12.78681 -12.51838 -12.27639 -12.08068 -11.02272 -10.99192 -10.74141 -10.41525 -10.27392 -10.20102 -9.46759 -9.42408 -8.70235 -8.61286 -7.28350 -6.22589 -4.29393 1.40251 1.51906 3.21970 3.27049 3.29601 3.39488 3.84152 4.18000 4.19759 4.30154 4.60092 4.87646 5.03882 5.14105 5.25418 5.38802 5.52065 5.55210 5.69135 5.97502 6.40519 6.58636 7.11387 7.31491 7.42939 7.56218 7.74320 7.89253 8.37582 8.66624 8.95523 9.36700 10.87448 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.079592 B = 0.005436 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.709832 B = 5149.186625 C = 5468.206886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.262 3.738 10 N -0.667 5.667 11 C 0.571 3.429 12 N -0.555 5.555 13 C 0.225 3.775 14 C -0.345 4.345 15 C 0.182 3.818 16 N -0.565 5.565 17 C 0.104 3.896 18 O -0.361 6.361 19 C 0.117 3.883 20 H 0.267 0.733 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.407 0.593 24 H 0.163 0.837 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -14.440 0.684 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.141 3.859 10 N -0.296 5.296 11 C 0.215 3.785 12 N -0.278 5.278 13 C 0.056 3.944 14 C -0.356 4.356 15 C 0.029 3.971 16 N -0.289 5.289 17 C 0.027 3.973 18 O -0.279 6.279 19 C 0.040 3.960 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.243 0.757 24 H 0.181 0.819 25 H 0.126 0.874 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.823 -13.241 0.575 13.378 hybrid contribution 0.369 0.440 0.113 0.585 sum 2.192 -12.801 0.688 13.006 Atomic orbital electron populations 1.69968 1.06066 1.27416 1.48731 1.24917 0.94947 0.99414 0.94543 0.86380 0.79645 0.82418 0.78297 1.20387 1.20930 1.19700 1.21214 0.93448 0.90291 1.53537 0.91786 1.19220 0.87767 0.80810 0.98061 1.45252 1.11103 1.00498 1.72774 1.19604 0.84542 0.87109 0.87277 1.68310 1.14030 1.22829 1.22659 1.22138 0.99714 0.85444 0.87108 1.22027 0.97312 0.98039 1.18186 1.22091 0.93003 0.92682 0.89312 1.66980 1.39545 0.98592 1.23822 1.21567 0.91832 0.81967 1.01965 1.89107 1.16187 1.41530 1.81036 1.21292 0.86783 0.87645 1.00317 0.92374 0.95118 0.95114 0.75668 0.81943 0.87404 0.89247 0.88905 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.29 55.43 0.74 -24.81 15 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 3 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 7 C -0.55 -14.85 9.28 -34.44 -0.32 -15.17 15 8 H 0.06 1.66 7.60 -52.49 -0.40 1.26 15 9 C 0.26 6.84 5.40 -5.19 -0.03 6.81 15 10 N -0.67 -14.97 5.70 -63.45 -0.36 -15.33 15 11 C 0.57 12.13 8.42 -322.59 -2.72 9.41 15 12 N -0.55 -11.44 9.59 -13.98 -0.13 -11.58 15 13 C 0.22 3.59 11.30 -17.34 -0.20 3.40 15 14 C -0.35 -5.07 6.38 -104.41 -0.67 -5.73 15 15 C 0.18 2.92 7.56 -82.25 -0.62 2.30 15 16 N -0.56 -10.79 10.46 -10.07 -0.11 -10.90 15 17 C 0.10 1.25 7.63 36.12 0.28 1.53 15 18 O -0.36 -4.50 11.72 -35.23 -0.41 -4.91 15 19 C 0.12 1.31 7.63 36.06 0.28 1.58 15 20 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 21 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.03 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.41 8.48 8.43 -40.82 -0.34 8.14 15 24 H 0.16 1.95 8.06 -52.49 -0.42 1.53 15 25 H 0.11 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 LS Contribution 251.92 15.07 3.80 3.80 Total: -1.00 -30.78 251.92 -8.43 -39.21 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -2.84 Total: 2.88 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -4.10 Total: 5.84 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.14 Total: -62.61 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.41 Total: -4.91 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.78 -8.43 -39.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107121.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.656 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds