Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48499 * 109.47254 * 270.00575 * 3 2 1 5 5 H 1.48501 * 109.46819 * 30.00380 * 3 2 1 6 6 H 1.48497 * 109.46777 * 150.00073 * 3 2 1 7 7 C 1.37877 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00177 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.38408 * 119.99812 * 180.02562 * 10 9 7 12 12 N 1.32514 * 119.13541 * 359.97438 * 11 10 9 13 13 C 1.32474 * 120.78340 * 179.97438 * 12 11 10 14 14 C 1.38069 * 118.86758 * 0.02562 * 13 12 11 15 15 C 1.38836 * 118.89965 * 359.97438 * 14 13 12 16 16 N 1.31858 * 119.25917 * 0.02562 * 15 14 13 17 17 C 1.50934 * 107.19055 * 180.02562 * 15 14 13 18 18 O 1.43990 * 105.99988 * 17.58083 * 17 15 14 19 19 C 1.44001 * 105.00995 * 331.73395 * 18 17 15 20 20 H 0.96998 * 119.99866 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46968 * 60.00204 * 9 7 2 22 22 H 1.09000 * 109.47194 * 299.99842 * 9 7 2 23 23 H 0.96998 * 119.99733 * 359.97438 * 10 9 7 24 24 H 1.08001 * 120.56609 * 179.73281 * 13 12 11 25 25 H 1.08990 * 110.14937 * 136.71378 * 17 15 14 26 26 H 1.09001 * 110.14371 * 258.38525 * 17 15 14 27 27 H 1.09002 * 110.15592 * 147.35379 * 19 18 17 28 28 H 1.09000 * 110.16035 * 269.04943 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7418 -4.9176 -0.0011 12 7 0.4354 -5.1400 -0.0011 13 6 -0.0419 -6.3758 -0.0021 14 6 0.8458 -7.4333 -0.0026 15 6 2.2081 -7.1657 -0.0026 16 7 2.6188 -5.9127 -0.0016 17 6 2.9238 -8.4946 -0.0039 18 8 1.9502 -9.4693 -0.4226 19 6 0.6812 -8.9323 -0.0043 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 3.1568 -3.4354 -0.0009 24 1 -1.1073 -6.5531 0.0023 25 1 3.7574 -8.4714 -0.7055 26 1 3.2833 -8.7283 0.9982 27 1 -0.0998 -9.2235 -0.7068 28 1 0.4357 -9.2854 0.9973 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107121.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = -2.724266 kcal Electronic energy + Delta-G solvation = -14171.941830 eV Core-core repulsion = 11608.648583 eV Total energy + Delta-G solvation = -2563.293248 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.46490 -39.72846 -36.94103 -34.84542 -34.63077 -32.27607 -29.84066 -28.80623 -26.42602 -24.99736 -23.27989 -22.82884 -19.77898 -18.72965 -18.00983 -17.41383 -16.97183 -16.70075 -16.05193 -15.91434 -15.20932 -14.71540 -14.50938 -14.20905 -14.08918 -13.76783 -13.45590 -12.87819 -12.79374 -12.26795 -12.02645 -11.75500 -11.57780 -11.49283 -10.82425 -10.47226 -10.12059 -8.87217 -8.32008 -6.47693 0.06598 0.17202 1.41001 1.43013 1.54054 1.89833 2.37335 2.78744 2.85051 2.94630 3.02964 3.44876 3.63555 3.75727 4.31626 4.37723 4.55470 4.61719 4.67628 4.83081 4.99685 5.26090 5.26390 5.46777 5.56868 5.78823 5.86273 6.15470 6.60896 6.70261 7.21262 7.40776 8.79642 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.079592 B = 0.005436 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.709832 B = 5149.186625 C = 5468.206886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.290 3.710 10 N -0.680 5.680 11 C 0.552 3.448 12 N -0.595 5.595 13 C 0.212 3.788 14 C -0.326 4.326 15 C 0.160 3.840 16 N -0.576 5.576 17 C 0.111 3.889 18 O -0.366 6.366 19 C 0.119 3.881 20 H 0.270 0.730 21 H -0.004 1.004 22 H -0.003 1.003 23 H 0.411 0.589 24 H 0.201 0.799 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -16.005 0.826 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.602 4.602 8 H 0.092 0.908 9 C 0.168 3.832 10 N -0.313 5.313 11 C 0.195 3.805 12 N -0.319 5.319 13 C 0.046 3.954 14 C -0.335 4.335 15 C 0.008 3.992 16 N -0.300 5.300 17 C 0.033 3.967 18 O -0.284 6.284 19 C 0.042 3.958 20 H 0.079 0.921 21 H 0.014 0.986 22 H 0.015 0.985 23 H 0.248 0.752 24 H 0.217 0.783 25 H 0.140 0.860 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.470 -14.911 0.717 15.131 hybrid contribution 0.094 0.674 0.069 0.684 sum 2.564 -14.237 0.786 14.488 Atomic orbital electron populations 1.70103 1.07887 1.28626 1.49523 1.25940 0.95835 1.03420 0.93727 0.85203 0.78430 0.77250 0.78626 1.19583 1.20435 1.18550 1.21587 0.94112 0.90969 1.53551 0.90779 1.18553 0.87671 0.82212 0.94794 1.44800 1.10450 1.00585 1.75443 1.19659 0.85279 0.87065 0.88505 1.68279 1.14172 1.25616 1.23878 1.22782 1.01784 0.84426 0.86425 1.22554 0.96476 1.00073 1.14434 1.22968 0.94831 0.92879 0.88487 1.66969 1.39309 0.99517 1.24250 1.21764 0.91647 0.79370 1.03897 1.89118 1.16625 1.41282 1.81401 1.21556 0.86974 0.84485 1.02747 0.92073 0.98561 0.98463 0.75211 0.78268 0.85993 0.86654 0.86337 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.78 13.29 21.45 0.28 -54.50 15 2 C 0.01 0.62 5.46 84.65 0.46 1.08 15 3 Si 0.98 42.87 29.54 68.60 2.03 44.90 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 7 C -0.56 -31.51 9.28 25.60 0.24 -31.27 15 8 H 0.07 3.88 7.60 -2.91 -0.02 3.86 15 9 C 0.29 16.00 5.40 85.63 0.46 16.46 15 10 N -0.68 -31.99 5.70 -354.64 -2.02 -34.01 15 11 C 0.55 24.13 8.42 261.41 2.20 26.33 15 12 N -0.60 -25.18 9.59 -198.15 -1.90 -27.08 15 13 C 0.21 6.54 11.30 84.56 0.96 7.50 15 14 C -0.33 -8.79 6.38 -19.73 -0.13 -8.92 15 15 C 0.16 4.85 7.56 42.77 0.32 5.17 15 16 N -0.58 -21.99 10.46 -185.77 -1.94 -23.94 15 17 C 0.11 2.30 7.63 71.31 0.54 2.84 15 18 O -0.37 -7.68 11.72 -148.98 -1.75 -9.42 15 19 C 0.12 2.15 7.63 71.27 0.54 2.70 15 20 H 0.27 14.93 8.31 -92.71 -0.77 14.15 15 21 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 15 22 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 23 H 0.41 17.89 8.43 -92.71 -0.78 17.10 15 24 H 0.20 4.37 8.06 -2.91 -0.02 4.35 15 25 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.12 1.87 8.14 -2.39 -0.02 1.85 15 27 H 0.12 1.63 8.14 -2.39 -0.02 1.61 15 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 15 Total: -1.00 -68.87 251.92 0.71 -68.16 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.41 Total: 14.00 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 5.60 Total: 21.89 kcal Atomic # 7 Polarization: -133.94 SS G_CDS: -5.58 Total: -139.52 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -1.75 Total: -9.42 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.87 0.71 -68.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107121.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.437 kcal (2) G-P(sol) polarization free energy of solvation -68.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds