Wall clock time and date at job start Mon Mar 30 2020 03:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31994 * 118.97855 * 2 1 4 4 C 1.32124 * 120.73005 * 180.28491 * 3 2 1 5 5 C 1.38404 * 119.22462 * 359.97438 * 4 3 2 6 6 C 1.39079 * 118.71709 * 0.02562 * 5 4 3 7 7 N 1.38525 * 120.71409 * 179.97438 * 6 5 4 8 8 C 1.36932 * 120.00126 * 180.02562 * 7 6 5 9 9 H 1.07995 * 119.99947 * 0.02562 * 8 7 6 10 10 C 1.38855 * 119.99897 * 180.02562 * 8 7 6 11 11 N 1.31541 * 119.99841 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00136 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.46880 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47299 * 119.99990 * 12 10 8 15 15 H 1.48494 * 109.47038 * 240.00072 * 12 10 8 16 16 N 1.31714 * 118.98770 * 180.27925 * 2 1 3 17 17 C 1.50752 * 107.48357 * 180.02562 * 5 4 3 18 18 O 1.44013 * 105.92800 * 17.50205 * 17 5 4 19 19 C 1.43984 * 104.94033 * 331.86459 * 18 17 5 20 20 H 1.09003 * 109.46769 * 269.72225 * 1 2 3 21 21 H 1.08999 * 109.47780 * 29.72622 * 1 2 3 22 22 H 1.08995 * 109.46955 * 149.73074 * 1 2 3 23 23 H 0.97004 * 119.99715 * 0.03087 * 7 6 5 24 24 H 0.97000 * 119.99462 * 179.97438 * 11 10 8 25 25 H 1.09008 * 110.16038 * 136.61923 * 17 5 4 26 26 H 1.09000 * 110.15715 * 258.31509 * 17 5 4 27 27 H 1.09000 * 110.15017 * 147.30126 * 19 18 17 28 28 H 1.09001 * 110.14779 * 269.03796 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1465 1.1547 0.0000 4 6 3.4671 1.1951 -0.0056 5 6 4.1794 0.0084 -0.0111 6 6 3.4776 -1.1923 -0.0109 7 7 4.1487 -2.4041 -0.0168 8 6 3.4431 -3.5776 -0.0171 9 1 2.3633 -3.5584 -0.0132 10 6 4.1158 -4.7923 -0.0224 11 7 5.4310 -4.8156 -0.0276 12 14 3.1533 -6.3931 -0.0235 13 1 1.6983 -6.0958 -0.0188 14 1 3.4943 -7.1749 -1.2392 15 1 3.5020 -7.1812 1.1858 16 7 2.1453 -1.1521 -0.0056 17 6 5.6453 0.3602 -0.0161 18 8 5.7231 1.7357 0.4031 19 6 4.4731 2.3203 -0.0077 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8924 -0.5095 22 1 -0.3633 -0.8875 -0.5180 23 1 5.1186 -2.4213 -0.0206 24 1 5.9010 -5.6642 -0.0310 25 1 6.1870 -0.2769 0.6832 26 1 6.0550 0.2485 -1.0200 27 1 4.1712 3.0950 0.6971 28 1 4.5658 2.7391 -1.0098 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260162750.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:05 Heat of formation + Delta-G solvation = -10.076189 kcal Electronic energy + Delta-G solvation = -14648.814220 eV Core-core repulsion = 12085.202169 eV Total energy + Delta-G solvation = -2563.612051 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.18147 -39.46576 -37.69939 -34.50656 -33.85499 -31.98296 -30.28958 -29.03166 -27.22497 -24.91483 -22.90826 -22.57121 -20.25912 -18.42049 -18.18767 -17.31934 -17.01757 -16.36402 -15.78952 -15.72943 -14.94545 -14.74871 -14.31882 -13.95112 -13.55405 -13.47375 -13.37184 -13.09461 -12.96337 -12.56246 -12.44441 -12.09799 -11.53641 -11.23349 -11.00664 -10.20467 -9.85493 -9.22083 -8.62296 -5.92651 0.22130 0.56880 1.40444 1.45175 1.55111 2.20031 2.77318 2.79524 2.84084 2.93809 3.23388 3.56529 3.80969 4.19087 4.40081 4.42843 4.48358 4.63836 4.70709 4.80638 4.82628 5.01275 5.09123 5.30263 5.53756 5.55495 5.91563 6.30641 6.69530 7.16996 7.26410 7.75473 8.54316 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.009154 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.447900 B = 3057.906579 C = 3933.430319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.343 3.657 3 N -0.592 5.592 4 C 0.154 3.846 5 C -0.377 4.377 6 C 0.389 3.611 7 N -0.526 5.526 8 C -0.315 4.315 9 H 0.104 0.896 10 C -0.018 4.018 11 N -0.917 5.917 12 Si 1.004 2.996 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.273 1.273 16 N -0.601 5.601 17 C 0.126 3.874 18 O -0.367 6.367 19 C 0.111 3.889 20 H 0.093 0.907 21 H 0.099 0.901 22 H 0.083 0.917 23 H 0.406 0.594 24 H 0.282 0.718 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 7.503 -0.766 8.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.073 3.927 3 N -0.318 5.318 4 C 0.011 3.989 5 C -0.392 4.392 6 C 0.141 3.859 7 N -0.134 5.134 8 C -0.446 4.446 9 H 0.122 0.878 10 C -0.220 4.220 11 N -0.555 5.555 12 Si 0.826 3.174 13 H -0.186 1.186 14 H -0.198 1.198 15 H -0.198 1.198 16 N -0.330 5.330 17 C 0.048 3.952 18 O -0.285 6.285 19 C 0.034 3.966 20 H 0.112 0.888 21 H 0.118 0.882 22 H 0.102 0.898 23 H 0.242 0.758 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.144 0.856 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.975 7.136 -0.653 8.195 hybrid contribution 1.076 -1.186 -0.072 1.603 sum -2.899 5.950 -0.726 6.659 Atomic orbital electron populations 1.20536 0.83570 1.04365 1.04374 1.23670 0.98968 0.82222 0.87840 1.67400 1.07980 1.29792 1.26634 1.22617 0.91150 0.95569 0.89589 1.21569 0.99420 0.94939 1.23248 1.17942 0.88582 0.85262 0.94071 1.40935 1.08111 1.02082 1.62241 1.20130 0.93528 0.82968 1.47933 0.87783 1.26292 0.96785 1.02908 0.95982 1.69737 1.07887 1.29320 1.48520 0.84692 0.78375 0.76109 0.78176 1.18618 1.19773 1.19841 1.67925 1.07476 1.30838 1.26784 1.21150 0.90694 0.82823 1.00484 1.89050 1.35311 1.22527 1.81631 1.21721 0.79312 0.92071 1.03457 0.88834 0.88247 0.89849 0.75808 0.90870 0.89750 0.90402 0.85635 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 10.31 71.24 0.73 -1.32 15 2 C 0.34 13.99 7.64 138.71 1.06 15.05 15 3 N -0.59 -23.54 10.34 -175.99 -1.82 -25.36 15 4 C 0.15 5.93 7.56 42.63 0.32 6.25 15 5 C -0.38 -15.99 6.29 -19.61 -0.12 -16.11 15 6 C 0.39 18.91 7.46 132.94 0.99 19.90 15 7 N -0.53 -26.95 5.41 -188.97 -1.02 -27.97 15 8 C -0.31 -16.82 9.72 84.04 0.82 -16.00 15 9 H 0.10 5.68 7.12 -2.91 -0.02 5.66 15 10 C -0.02 -0.94 5.50 84.88 0.47 -0.47 15 11 N -0.92 -48.24 13.05 21.65 0.28 -47.95 15 12 Si 1.00 40.58 29.55 68.60 2.03 42.61 15 13 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 14 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 15 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 16 N -0.60 -28.64 9.17 -185.57 -1.70 -30.34 15 17 C 0.13 4.47 7.43 71.25 0.53 5.00 15 18 O -0.37 -12.04 11.73 -148.98 -1.75 -13.79 15 19 C 0.11 3.25 7.63 71.31 0.54 3.79 15 20 H 0.09 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.10 2.43 8.14 -2.39 -0.02 2.42 15 22 H 0.08 2.36 8.14 -2.39 -0.02 2.34 15 23 H 0.41 20.53 7.74 -92.71 -0.72 19.81 15 24 H 0.28 13.82 8.31 -92.71 -0.77 13.05 15 25 H 0.08 2.98 8.14 -2.38 -0.02 2.96 15 26 H 0.08 2.53 8.14 -2.39 -0.02 2.51 15 27 H 0.13 3.06 8.14 -2.39 -0.02 3.04 15 28 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 Total: -1.00 -61.42 250.27 1.84 -59.58 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.48 Total: 27.13 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 5.34 Total: 16.09 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -4.26 Total: -131.63 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.75 Total: -13.79 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -61.42 1.84 -59.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162750.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.507 kcal (2) G-P(sol) polarization free energy of solvation -61.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds