Wall clock time and date at job start Mon Mar 30 2020 03:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30932 * 1 3 3 Si 1.86802 * 120.00339 * 2 1 4 4 H 1.48500 * 109.46825 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47105 * 119.99717 * 3 2 1 6 6 H 1.48498 * 109.46794 * 240.00127 * 3 2 1 7 7 C 1.39874 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00167 * 206.64043 * 7 2 1 9 9 C 1.41059 * 119.99846 * 26.64599 * 7 2 1 10 10 C 1.40997 * 121.00807 * 24.27862 * 9 7 2 11 11 N 1.31868 * 118.92678 * 179.97438 * 10 9 7 12 12 C 1.32833 * 121.17335 * 0.02562 * 11 10 9 13 13 N 1.37950 * 118.86911 * 179.97438 * 12 11 10 14 14 C 1.47487 * 110.99764 * 264.02627 * 13 12 11 15 15 C 1.53511 * 87.92974 * 138.70556 * 14 13 12 16 16 C 1.47477 * 111.00229 * 359.97438 * 13 12 11 17 17 N 1.32653 * 122.25834 * 359.97438 * 12 11 10 18 18 C 1.32385 * 120.92044 * 359.72591 * 17 12 11 19 19 O 1.35283 * 120.63057 * 180.26037 * 18 17 12 20 20 H 0.97000 * 120.00804 * 185.89679 * 1 2 3 21 21 H 1.08001 * 120.53362 * 359.95679 * 10 9 7 22 22 H 1.08998 * 113.47656 * 253.47208 * 14 13 12 23 23 H 1.08996 * 113.47492 * 23.94003 * 14 13 12 24 24 H 1.08999 * 114.17084 * 220.32867 * 15 14 13 25 25 H 1.08999 * 114.34263 * 87.63752 * 15 14 13 26 26 H 1.09001 * 113.47776 * 336.06180 * 16 13 12 27 27 H 1.09003 * 113.47668 * 106.53351 * 16 13 12 28 28 H 0.96701 * 114.00676 * 270.26027 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 1.2784 2.7464 0.0006 5 1 3.0971 1.6963 1.2125 6 1 3.0971 1.6963 -1.2125 7 6 2.0086 -1.2114 0.0005 8 1 3.0026 -1.2609 0.4199 9 6 1.4156 -2.3683 -0.5468 10 6 0.3999 -2.2728 -1.5201 11 7 -0.1256 -3.3810 -2.0044 12 6 0.2851 -4.5747 -1.5909 13 7 -0.2980 -5.7030 -2.1293 14 6 -1.3840 -6.2007 -1.2643 15 6 -2.2023 -6.4621 -2.5365 16 6 -1.3288 -5.3435 -3.1208 17 7 1.2367 -4.7189 -0.6781 18 6 1.8274 -3.6641 -0.1387 19 8 2.8009 -3.8180 0.7880 20 1 -0.4851 -0.8355 0.0863 21 1 0.0577 -1.3076 -1.8632 22 1 -1.1244 -7.1090 -0.7206 23 1 -1.8139 -5.4323 -0.6217 24 1 -3.2578 -6.2043 -2.4491 25 1 -2.0340 -7.4408 -2.9858 26 1 -1.7441 -4.3465 -2.9734 27 1 -1.0226 -5.5252 -4.1510 28 1 2.4757 -3.8540 1.6980 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260297829.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:01 Heat of formation + Delta-G solvation = 43.607093 kcal Electronic energy + Delta-G solvation = -14819.022921 eV Core-core repulsion = 12257.738751 eV Total energy + Delta-G solvation = -2561.284169 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37945 -38.58850 -36.09666 -34.72889 -31.71973 -30.42830 -28.23385 -25.53537 -24.80789 -22.62297 -21.79719 -19.56828 -18.37652 -17.78556 -16.89485 -15.99602 -15.26251 -14.52654 -14.45739 -14.00469 -13.61552 -12.89635 -12.46181 -12.45331 -11.93087 -11.54033 -11.40221 -11.06490 -10.87178 -10.63360 -10.56111 -10.27931 -9.70045 -9.40173 -9.17043 -9.00522 -8.16043 -7.87354 -7.50421 -4.79308 2.19256 2.36513 2.98449 3.05930 3.20606 3.74381 4.09912 4.31987 4.78941 4.91424 5.09340 5.26652 5.57119 5.71450 5.86969 5.98855 6.06217 6.15580 6.31696 6.44793 6.53801 6.58440 7.00047 7.03412 7.35528 7.54307 7.77525 7.96922 8.26546 8.54554 8.65506 9.48746 9.57874 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.043935 B = 0.008421 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.156759 B = 3324.055840 C = 3762.649473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.034 3.966 3 Si 1.071 2.929 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.466 4.466 8 H 0.093 0.907 9 C -0.016 4.016 10 C 0.039 3.961 11 N -0.506 5.506 12 C 0.294 3.706 13 N -0.400 5.400 14 C 0.017 3.983 15 C -0.151 4.151 16 C 0.017 3.983 17 N -0.489 5.489 18 C 0.218 3.782 19 O -0.472 6.472 20 H 0.299 0.701 21 H 0.151 0.849 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -1.826 -0.133 3.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.190 4.190 3 Si 0.893 3.107 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.494 4.494 8 H 0.111 0.889 9 C -0.025 4.025 10 C -0.134 4.134 11 N -0.223 5.223 12 C -0.057 4.057 13 N -0.122 5.122 14 C -0.112 4.112 15 C -0.189 4.189 16 C -0.112 4.112 17 N -0.213 5.213 18 C 0.025 3.975 19 O -0.275 6.275 20 H 0.113 0.887 21 H 0.168 0.832 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.633 -1.459 -1.200 3.241 hybrid contribution -0.088 -0.432 1.151 1.233 sum -2.722 -1.891 -0.049 3.314 Atomic orbital electron populations 1.70562 1.08218 1.34377 1.26058 1.27407 0.95543 1.05033 0.91030 0.83530 0.75676 0.72921 0.78593 1.19416 1.19591 1.19477 1.20571 1.03645 0.93090 1.32092 0.88879 1.19314 0.94708 0.93757 0.94707 1.22840 0.99487 0.95295 0.95749 1.67555 1.28136 0.99009 1.27570 1.20125 0.97700 0.88108 0.99718 1.65926 1.18175 1.20589 1.07488 1.23631 0.91295 1.00477 0.95820 1.23155 0.98484 0.99857 0.97435 1.23614 0.91219 0.99279 0.97075 1.66671 1.07126 1.36425 1.11084 1.19012 0.95147 0.87259 0.96129 1.84665 1.30486 1.95069 1.17298 0.88731 0.83180 0.90172 0.91904 0.90897 0.89350 0.88576 0.90555 0.77257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.50 12.33 55.55 0.68 -17.81 15 2 C 0.03 0.78 4.95 -17.32 -0.09 0.69 15 3 Si 1.07 19.42 30.01 -169.99 -5.10 14.32 15 4 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 5 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 6 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 7 C -0.47 -11.44 8.71 -37.90 -0.33 -11.77 15 8 H 0.09 2.25 7.78 -52.49 -0.41 1.84 15 9 C -0.02 -0.41 5.34 -106.36 -0.57 -0.98 15 10 C 0.04 0.99 9.27 -16.49 -0.15 0.83 15 11 N -0.51 -12.59 8.12 -13.41 -0.11 -12.70 15 12 C 0.29 7.31 6.75 -322.82 -2.18 5.13 15 13 N -0.40 -8.58 6.50 -185.08 -1.20 -9.78 15 14 C 0.02 0.30 7.66 -7.59 -0.06 0.24 15 15 C -0.15 -2.17 8.47 -26.22 -0.22 -2.40 15 16 C 0.02 0.31 7.35 -7.62 -0.06 0.26 15 17 N -0.49 -12.80 10.47 -13.45 -0.14 -12.94 15 18 C 0.22 5.60 7.87 -15.89 -0.13 5.48 15 19 O -0.47 -10.85 12.97 -17.54 -0.23 -11.07 15 20 H 0.30 7.44 6.75 -40.82 -0.28 7.16 15 21 H 0.15 3.74 6.56 -52.49 -0.34 3.40 15 22 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.06 1.18 7.89 -51.93 -0.41 0.77 15 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.10 1.85 6.60 -51.93 -0.34 1.51 15 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 28 H 0.37 6.76 9.06 45.56 0.41 7.17 15 LS Contribution 245.29 15.07 3.70 3.70 Total: -1.00 -29.06 245.29 -8.03 -37.09 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -1.85 Total: 11.70 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -3.78 Total: -2.51 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.77 Total: -53.22 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.23 Total: -11.07 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.10 Total: 14.32 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.06 -8.03 -37.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297829.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.701 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds