Wall clock time and date at job start Mon Mar 30 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00062 * 2 1 4 4 H 1.48495 * 109.47099 * 94.92977 * 3 2 1 5 5 H 1.48502 * 109.46984 * 214.92700 * 3 2 1 6 6 H 1.48500 * 109.47104 * 334.92483 * 3 2 1 7 7 C 1.37879 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99906 * 357.90478 * 7 2 1 9 9 C 1.50699 * 120.00016 * 177.91123 * 7 2 1 10 10 H 1.09002 * 109.57229 * 25.82725 * 9 7 2 11 11 C 1.53432 * 109.57238 * 265.44186 * 9 7 2 12 12 N 1.46919 * 107.79025 * 177.00884 * 11 9 7 13 13 C 1.39916 * 118.92924 * 44.67423 * 12 11 9 14 14 C 1.39095 * 119.12339 * 166.76639 * 13 12 11 15 15 C 1.38034 * 120.08798 * 179.61884 * 14 13 12 16 16 C 1.38272 * 119.93347 * 0.02562 * 15 14 13 17 17 C 1.38356 * 120.13536 * 0.04033 * 16 15 14 18 18 F 1.35098 * 119.87418 * 180.02562 * 17 16 15 19 19 C 1.38565 * 120.83529 * 346.47936 * 13 12 11 20 20 C 1.50590 * 121.51023 * 0.47419 * 19 13 12 21 21 H 0.96996 * 119.99774 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.79847 * 296.57833 * 11 9 7 23 23 H 1.09000 * 109.79504 * 57.43841 * 11 9 7 24 24 H 0.97007 * 120.53612 * 224.66974 * 12 11 9 25 25 H 1.08002 * 119.95743 * 359.58659 * 14 13 12 26 26 H 1.07995 * 120.03636 * 179.97438 * 15 14 13 27 27 H 1.07998 * 119.93479 * 180.02562 * 16 15 14 28 28 H 1.09007 * 109.30016 * 219.04085 * 20 19 13 29 29 H 1.08999 * 109.13476 * 99.56332 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6009 1.9862 1.3948 5 1 3.4908 1.4724 -0.8016 6 1 1.3985 2.6805 -0.5934 7 6 2.0046 -1.1941 0.0005 8 1 1.4651 -2.1291 0.0351 9 6 3.5108 -1.1946 -0.0470 10 1 3.8897 -0.2620 0.3713 11 6 3.9791 -1.3365 -1.5012 12 7 5.4463 -1.2599 -1.5099 13 6 6.1672 -1.9796 -0.5508 14 6 7.5392 -2.1396 -0.7146 15 6 8.2712 -2.8393 0.2235 16 6 7.6392 -3.3820 1.3271 17 6 6.2745 -3.2260 1.4926 18 9 5.6625 -3.7581 2.5731 19 6 5.5324 -2.5242 0.5539 20 6 4.0484 -2.3747 0.7620 21 1 -0.4849 0.8400 -0.0004 22 1 3.6574 -2.2984 -1.9005 23 1 3.5637 -0.5284 -2.1033 24 1 5.9077 -0.7191 -2.1699 25 1 8.0323 -1.7163 -1.5772 26 1 9.3363 -2.9633 0.0952 27 1 8.2120 -3.9291 2.0613 28 1 3.8482 -2.2069 1.8203 29 1 3.5487 -3.2888 0.4414 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260309157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:00 Heat of formation + Delta-G solvation = -29.294886 kcal Electronic energy + Delta-G solvation = -14766.577515 eV Core-core repulsion = 12182.212117 eV Total energy + Delta-G solvation = -2584.365398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.45640 -39.41560 -36.00964 -33.27043 -31.99407 -30.09647 -28.89871 -25.27194 -24.04897 -22.16715 -21.63166 -18.81753 -17.62625 -17.10997 -16.16776 -15.29110 -15.20705 -14.97029 -14.39953 -14.06486 -13.41177 -13.11483 -12.84292 -12.51922 -12.41651 -12.14015 -11.59525 -11.18559 -11.01844 -10.84836 -10.26136 -9.97163 -9.73712 -9.35853 -9.17355 -8.64489 -8.18792 -7.02479 -6.17364 -4.18523 1.57516 1.81060 3.22399 3.31288 3.32667 3.91734 4.02802 4.33179 4.74875 5.09391 5.13973 5.35247 5.38565 5.72084 5.87423 5.93417 6.13627 6.29705 6.40959 6.45301 6.54371 6.62061 6.67205 6.82306 7.08515 7.14605 7.28460 7.58379 7.77611 8.19423 8.42579 8.88336 9.44637 10.95351 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037660 B = 0.009267 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.319841 B = 3020.880213 C = 3394.661892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.289 1.289 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.005 3.995 10 H 0.038 0.962 11 C 0.119 3.881 12 N -0.747 5.747 13 C 0.249 3.751 14 C -0.214 4.214 15 C -0.060 4.060 16 C -0.221 4.221 17 C 0.134 3.866 18 F -0.141 7.141 19 C -0.179 4.179 20 C -0.059 4.059 21 H 0.265 0.735 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.393 0.607 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.099 -2.958 -1.494 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.191 1.191 6 H -0.215 1.215 7 C -0.552 4.552 8 H 0.095 0.905 9 C -0.014 4.014 10 H 0.056 0.944 11 C -0.004 4.004 12 N -0.374 5.374 13 C 0.143 3.857 14 C -0.237 4.237 15 C -0.079 4.079 16 C -0.242 4.242 17 C 0.114 3.886 18 F -0.120 7.120 19 C -0.185 4.185 20 C -0.096 4.096 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.227 0.773 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.088 0.912 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.647 -2.862 -1.467 14.021 hybrid contribution 0.465 1.060 -0.056 1.159 sum 14.111 -1.802 -1.524 14.307 Atomic orbital electron populations 1.69895 1.06298 1.27165 1.49863 1.25080 0.94714 0.98984 0.94090 0.86858 0.80010 0.83604 0.78996 1.20111 1.19053 1.21528 1.20912 0.88126 0.94767 1.51411 0.90513 1.19399 0.96892 0.94342 0.90791 0.94429 1.22312 0.76248 1.00809 1.01015 1.45197 1.07283 1.51611 1.33327 1.17384 0.90266 0.90121 0.87953 1.20659 0.92636 1.07988 1.02415 1.20525 0.98985 0.95586 0.92781 1.20694 0.92778 1.08833 1.01922 1.17428 0.90556 0.96207 0.84454 1.91448 1.83683 1.84030 1.52798 1.19752 0.98535 1.05185 0.95040 1.20379 0.87426 1.00412 1.01419 0.92464 0.92740 0.90988 0.77283 0.86268 0.85886 0.85864 0.91195 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.96 55.43 0.77 -25.79 15 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 3 Si 0.88 21.01 26.82 -169.99 -4.56 16.45 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.27 -6.03 6.89 56.52 0.39 -5.64 15 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 7 C -0.51 -13.88 8.86 -34.44 -0.31 -14.19 15 8 H 0.08 2.25 8.06 -52.48 -0.42 1.83 15 9 C 0.01 0.13 1.86 -91.63 -0.17 -0.04 15 10 H 0.04 0.90 5.47 -51.93 -0.28 0.62 15 11 C 0.12 2.39 6.37 -3.59 -0.02 2.37 15 12 N -0.75 -12.79 5.80 -58.09 -0.34 -13.13 15 13 C 0.25 4.34 6.47 -83.73 -0.54 3.80 15 14 C -0.21 -3.08 9.87 -39.34 -0.39 -3.47 15 15 C -0.06 -0.79 10.04 -39.64 -0.40 -1.19 15 16 C -0.22 -3.26 10.01 -39.53 -0.40 -3.66 15 17 C 0.13 2.36 7.23 -39.36 -0.28 2.07 15 18 F -0.14 -2.56 16.53 2.25 0.04 -2.52 15 19 C -0.18 -3.43 5.76 -104.38 -0.60 -4.03 15 20 C -0.06 -1.26 4.78 -28.01 -0.13 -1.39 15 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.07 1.44 8.00 -51.93 -0.42 1.02 15 24 H 0.39 5.55 8.86 -40.82 -0.36 5.19 15 25 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.12 1.22 8.06 -52.49 -0.42 0.80 15 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.07 1.52 7.83 -51.93 -0.41 1.12 15 29 H 0.07 1.45 8.12 -51.93 -0.42 1.03 15 LS Contribution 247.91 15.07 3.74 3.74 Total: -1.00 -29.11 247.91 -6.84 -35.95 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.15 Total: 3.08 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.34 Total: -17.77 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.44 Total: -38.91 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.56 Total: 16.45 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.11 -6.84 -35.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.652 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds